Hello all, share your results with all populations included, reduce 5:

Can someone tell me the code to make a subset, as I only want certain samples and I can’t merge with the whole dataset 

Thanks

Quote:Two distinct and conflicting forms of nationalism – civic and ethnic – helped create the nation-states of Europe

Quote:At around three o’clock, on a warm and beautiful summer day, the headwaiter approached Hans Kohn’s table. It was 1914, and Kohn was tucked away with a friend in the cool and quiet Café Radetzky in the Malá Strana area of Prague, preparing for his upcoming bar examination. Sunday strollers crowded the city’s streets and parks while people chatted over beer and coffee in the open air. All presumably an unwelcome distraction for the two young law students.
The waiter’s hand trembled as he handed them a special edition of a local newspaper. It announced that Archduke Franz Ferdinand, the heir to the Austro-Hungarian throne, had been assassinated in Sarajevo. The mood in the country would quickly move from bewilderment to belligerence, driving Austria-Hungary into a disastrous world war. Four years later, the country was gone from the map of Europe.

A business-related article about 23andMe, does not sound like good times for the company:

https://fortune.com/2024/09/18/23andme-b...-wojcicki/

According to Hallast et al (2021), Southeast Asia is the origin point of all surviving lineages of the Non-African paternal haplogroups: C, F (i.e. FT) , D, and their subclades. This doesn't mean that C, F, and D formed there; it simply means that the most recent common ancestor (MRCA) of each of these haplogroups lived in Southeast Asia.

Quote:Here, we show that phylogenetic analyses of haplogroup C, D and FT sequences, including very rare deep-rooting lineages, together with phylogeographic analyses of ancient and present-day non-African Y chromosomes, all point to East/Southeast Asia as the origin 50,000–55,000 years ago of all known surviving non-African male lineages (apart from recent migrants). This observation contrasts with the expectation of a West Eurasian origin predicted by a simple model of expansion from a source near Africa, and can be interpreted as resulting from extensive genetic drift in the initial population or replacement of early western Y lineages from the east, thus informing and constraining models of the initial expansion.

The genetic history of Portugal over the past 5,000 years
Posted September 17, 2024.

Xavier Roca-Rada,  Roberta Davidson, Matthew P. Williams, Shyamsundar Ravishankar, Evelyn Collen, Christian Haarkotter,  View ORCID ProfileLeonard Taufik,  View ORCID ProfileAntonio Faustino Carvalho,  View ORCID ProfileVanessa Villalba-Mouco, Daniel R. Cuesta-Aguirre,  View ORCID ProfileCatarina Tente, Alvaro M. Monge Calleja,  View ORCID ProfileRebecca Anne MacRoberts, Linda Melo,  View ORCID ProfileGludhug A. Purnomo,  View ORCID ProfileYassine Souilmi,  View ORCID ProfileRaymond Tobler, Eugenia Cunha,  View ORCID ProfileSofia Tereso, Vitor M. J. Matos, Teresa Matos Fernandes, Anne-France Mauer, Ana Maria Silva, Pedro C. Carvalho,  Bastien Llamas,  Joao C. Teixeira

Quote:Abstract 
Background: Recent ancient DNA studies uncovering large-scale demographic events in Iberia have focused primarily on Spain, with limited reports for Portugal, a country located at the westernmost edge of continental Eurasia. Here, we introduce the largest collection of ancient Portuguese genomic datasets (n = 68) to date, spanning 5,000 years, from the Neolithic to the 19th century. Results: We found evidence of patrilocality in Neolithic Portugal, with admixture from local hunter-gatherers and Anatolian farmers, and persistence of Upper Paleolithic Magdalenian ancestry. This genetic profile persists into the Chalcolithic, reflecting diverse local hunter-gatherer contributions. During the Bronze Age, local genetic ancestry persisted, particularly in southern Iberia, despite influences from the North Pontic Steppe and early Mediterranean contacts. The Roman period highlights Idanha-a-Velha as a hub of migration and interaction, with a notably diverse genetic profile. The Early Medieval period is marked by Central European ancestry linked to Suebi/Visigoth migrations, adding to coeval local, African, and Mediterranean influences. The Islamic and Christian Conquest periods show strong genetic continuity in northern Portugal and significant African admixture in the south, with persistent Jewish and Islamic ancestries suggesting enduring influences in the post-Islamic period. Conclusions: This study represents the first attempt to reconstruct the genetic history of Portugal from the analysis of ancient individuals. We reveal dynamic patterns of migration and cultural exchange across millennia, but also the persistence of local ancestries. Our findings integrate genetic information with historical and archaeological data, enhancing our understanding of Iberia's ancient heritage.

First preliminary Y-DNA results. I am still running the sex detection. As always all of the results should be checked manually.

Snipsa with two read minimum.

Sample S3056 from Ribblesdale, dated to ca. 650 AD:

Global25:

It's about time!

The Allen Ancient DNA Resource (AADR): A curated compendium of ancient human genomes - David Reich Lab Dataverse (harvard.edu)

https://dataverse.harvard.edu/file.xhtml...d=10537416&version=9.0