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who has file autosomal this sample ?
#1
Hello guys
who has file autosomal this sample I8525 ( Narasimhan et al. 2019)
Thanks
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
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#2
I don't have an official, but I have a simulation that was converted from K36 by Nganasakhan when he was working on his regression formula. He ran the entire Reich dataset through K36 calcs, then used a linear regression and compared the results to known Davidski versions. Had less than 3% error so they're decent sims.

Note that is a contaminated sample.

Enjoy.

Turkmenistan_C_Geoksyur_contam:I8525_simulation,0.09281,0.108771,-0.026281,0.004803,-0.013982,0.012804,0.002228,0.002911,-0.020557,-0.012328,-0.00925,-0.001785,-0.003743,0.00595,0.012544,4e-06,-0.001189,-0.000744,-0.002982,0.008089,6.6e-05,-0.005633,0.004182,0.005148,0.001006
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#3
(11-11-2023, 10:34 PM)AimSmall Wrote: I don't have an official, but I have a simulation that was converted from K36 by Nganasakhan when he was working on his regression formula.  He ran the entire Reich dataset through K36 calcs, then used a linear regression and compared the results to known Davidski versions.  Had less than 3% error so they're decent sims.

Note that is a contaminated sample.

Enjoy.

Turkmenistan_C_Geoksyur_contam:I8525_simulation,0.09281,0.108771,-0.026281,0.004803,-0.013982,0.012804,0.002228,0.002911,-0.020557,-0.012328,-0.00925,-0.001785,-0.003743,0.00595,0.012544,4e-06,-0.001189,-0.000744,-0.002982,0.008089,6.6e-05,-0.005633,0.004182,0.005148,0.001006

Thanks you so much , K36 better than nothing
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
Reply
#4
(11-11-2023, 10:34 PM)AimSmall Wrote: I don't have an official, but I have a simulation that was converted from K36 by Nganasakhan when he was working on his regression formula.  He ran the entire Reich dataset through K36 calcs, then used a linear regression and compared the results to known Davidski versions.  Had less than 3% error so they're decent sims.

Note that is a contaminated sample.

Enjoy.

Turkmenistan_C_Geoksyur_contam:I8525_simulation,0.09281,0.108771,-0.026281,0.004803,-0.013982,0.012804,0.002228,0.002911,-0.020557,-0.012328,-0.00925,-0.001785,-0.003743,0.00595,0.012544,4e-06,-0.001189,-0.000744,-0.002982,0.008089,6.6e-05,-0.005633,0.004182,0.005148,0.001006

Maybe it's linked with spreading Yamnaya to central Asia ?
Target: Turkmenistan_C_Geoksyur_contam:I8525_simulation
Distance: 2.3192% / 0.02319222
33.8 Steppe_Proto_Yamnaya
23.4 Anatolia_Greece_10KYA
12.2 Caucasus_10KYA
11.0 Zagros_Mountains_10KYA
9.0 Levant_10KYA
3.0 South_Baltic_Coast_10KYA
3.0 Southern_Asia_10KYA
2.8 Northern_Iran_10KYA
1.8 Northwest_Africa_10KYA

Distance to: Turkmenistan_C_Geoksyur_contam:I8525_simulation
0.05290593 Lezgin_simulated
0.05511174 Kumyk_simulated
0.05559056 Ingush_simulated
0.05570550 Circassian_simulated
0.05651501 Turkish_Thrace_simulated
0.05755139 Chechen_simulated
0.05843692 Tabasaran_simulated
0.06190458 Balkar_simulated
0.06379019 Turkish_Westcentral_simulated
0.06450983 Azerbaijani_Turkey_simulated
0.06470541 Turkish_Deliorman_simulated
0.06530032 Kabardian_simulated
0.06576366 Kurd_Kurmanji_Turkey_simulated
0.06609781 Avar_simulated
0.06614805 Zaza_simulated
0.06632552 Ossetian_simulated
0.06640423 Turkish_simulated
0.06667654 Ossetian_North_simulated
0.06675006 Turkish_Eastcentral_simulated
0.06678324 Turkish_East_simulated
0.06784537 Kurd_Sorani_simulated
0.06864134 Turkish_Southeast_simulated
0.06870705 Azerbaijani_Azerbaijan_simulated
0.06872138 Lak_simulated
0.06879768 Azerbaijani_Iran_simulated
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
Reply
#5
(11-11-2023, 10:34 PM)AimSmall Wrote: I don't have an official, but I have a simulation that was converted from K36 by Nganasakhan when he was working on his regression formula.  He ran the entire Reich dataset through K36 calcs, then used a linear regression and compared the results to known Davidski versions.  Had less than 3% error so they're decent sims.

Note that is a contaminated sample.

Enjoy.

Turkmenistan_C_Geoksyur_contam:I8525_simulation,0.09281,0.108771,-0.026281,0.004803,-0.013982,0.012804,0.002228,0.002911,-0.020557,-0.012328,-0.00925,-0.001785,-0.003743,0.00595,0.012544,4e-06,-0.001189,-0.000744,-0.002982,0.008089,6.6e-05,-0.005633,0.004182,0.005148,0.001006

It's being used by both FTDNA and theytree. Where can I get more information about the contamination and whether the haplogroup is from that site or might be the result of a contamination?
The autosomal data looks irregular compared to the other samples from that site and rather modern.
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#6
From the anno file, they don't have a Y haplogroup: n/a (sex unknown)
mtDNA Hap: H2
Skeletal Code: MOS320 (Geoksyur 1, 1963, N 130, Tolos "S", IE-10-21)
Assessment: QUESTIONABLE_CRITICAL
Assessment Warnings: sexratio=0.173, PCA.outlier, mtcontam=[0.836,0.936]
Publication: NarasimhanPattersonScience2019
GroupID: Turkmenistan_C_Geoksyur_contam
1240K Coverage: 0.083347
SNPs hit on autosomal targets: 92922
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