who has file autosomal this sample ? - Printable Version +- The GenArchivist Forum (https://genarchivist.com) +-- Forum: Human Population Genetics (https://genarchivist.com/forumdisplay.php?fid=21) +--- Forum: Ancient (aDNA) (https://genarchivist.com/forumdisplay.php?fid=181) +--- Thread: who has file autosomal this sample ? (/showthread.php?tid=258) |
who has file autosomal this sample ? - Capsian20 - 11-11-2023 Hello guys who has file autosomal this sample I8525 ( Narasimhan et al. 2019) Thanks RE: who has file autosomal this sample ? - AimSmall - 11-11-2023 I don't have an official, but I have a simulation that was converted from K36 by Nganasakhan when he was working on his regression formula. He ran the entire Reich dataset through K36 calcs, then used a linear regression and compared the results to known Davidski versions. Had less than 3% error so they're decent sims. Note that is a contaminated sample. Enjoy. Turkmenistan_C_Geoksyur_contam:I8525_simulation,0.09281,0.108771,-0.026281,0.004803,-0.013982,0.012804,0.002228,0.002911,-0.020557,-0.012328,-0.00925,-0.001785,-0.003743,0.00595,0.012544,4e-06,-0.001189,-0.000744,-0.002982,0.008089,6.6e-05,-0.005633,0.004182,0.005148,0.001006 RE: who has file autosomal this sample ? - Capsian20 - 11-11-2023 (11-11-2023, 10:34 PM)AimSmall Wrote: I don't have an official, but I have a simulation that was converted from K36 by Nganasakhan when he was working on his regression formula. He ran the entire Reich dataset through K36 calcs, then used a linear regression and compared the results to known Davidski versions. Had less than 3% error so they're decent sims. Thanks you so much , K36 better than nothing RE: who has file autosomal this sample ? - Capsian20 - 11-11-2023 (11-11-2023, 10:34 PM)AimSmall Wrote: I don't have an official, but I have a simulation that was converted from K36 by Nganasakhan when he was working on his regression formula. He ran the entire Reich dataset through K36 calcs, then used a linear regression and compared the results to known Davidski versions. Had less than 3% error so they're decent sims. Maybe it's linked with spreading Yamnaya to central Asia ? Target: Turkmenistan_C_Geoksyur_contam:I8525_simulation Distance: 2.3192% / 0.02319222 33.8 Steppe_Proto_Yamnaya 23.4 Anatolia_Greece_10KYA 12.2 Caucasus_10KYA 11.0 Zagros_Mountains_10KYA 9.0 Levant_10KYA 3.0 South_Baltic_Coast_10KYA 3.0 Southern_Asia_10KYA 2.8 Northern_Iran_10KYA 1.8 Northwest_Africa_10KYA Distance to: Turkmenistan_C_Geoksyur_contam:I8525_simulation 0.05290593 Lezgin_simulated 0.05511174 Kumyk_simulated 0.05559056 Ingush_simulated 0.05570550 Circassian_simulated 0.05651501 Turkish_Thrace_simulated 0.05755139 Chechen_simulated 0.05843692 Tabasaran_simulated 0.06190458 Balkar_simulated 0.06379019 Turkish_Westcentral_simulated 0.06450983 Azerbaijani_Turkey_simulated 0.06470541 Turkish_Deliorman_simulated 0.06530032 Kabardian_simulated 0.06576366 Kurd_Kurmanji_Turkey_simulated 0.06609781 Avar_simulated 0.06614805 Zaza_simulated 0.06632552 Ossetian_simulated 0.06640423 Turkish_simulated 0.06667654 Ossetian_North_simulated 0.06675006 Turkish_Eastcentral_simulated 0.06678324 Turkish_East_simulated 0.06784537 Kurd_Sorani_simulated 0.06864134 Turkish_Southeast_simulated 0.06870705 Azerbaijani_Azerbaijan_simulated 0.06872138 Lak_simulated 0.06879768 Azerbaijani_Iran_simulated RE: who has file autosomal this sample ? - Riverman - 04-21-2024 (11-11-2023, 10:34 PM)AimSmall Wrote: I don't have an official, but I have a simulation that was converted from K36 by Nganasakhan when he was working on his regression formula. He ran the entire Reich dataset through K36 calcs, then used a linear regression and compared the results to known Davidski versions. Had less than 3% error so they're decent sims. It's being used by both FTDNA and theytree. Where can I get more information about the contamination and whether the haplogroup is from that site or might be the result of a contamination? The autosomal data looks irregular compared to the other samples from that site and rather modern. RE: who has file autosomal this sample ? - AimSmall - 04-21-2024 From the anno file, they don't have a Y haplogroup: n/a (sex unknown) mtDNA Hap: H2 Skeletal Code: MOS320 (Geoksyur 1, 1963, N 130, Tolos "S", IE-10-21) Assessment: QUESTIONABLE_CRITICAL Assessment Warnings: sexratio=0.173, PCA.outlier, mtcontam=[0.836,0.936] Publication: NarasimhanPattersonScience2019 GroupID: Turkmenistan_C_Geoksyur_contam 1240K Coverage: 0.083347 SNPs hit on autosomal targets: 92922 |