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Genetic Genealogy & Ancient DNA (DISCUSSION ONLY)
(02-27-2024, 06:32 PM)dumuzi Wrote:
(02-27-2024, 01:57 PM)J Man Wrote: If anyone has time is it possible to check these samples for Y-DNA?

Data for "Medieval genomes from eastern Mongolia share a stable genetic profile over a millennium"

https://edmond.mpg.de/dataset.xhtml?pers...7/3.DDZCWN

https://www.theytree.com/portal/index/sa...millennium

Amazing! Thank you very much.
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(02-25-2024, 10:29 AM)Radko Wrote: EAA 2024 abstracts...

Genomic transect of Early Medieval Moravia and Slovakia uncovers population turnover

In the 6th century, a population labeled as “Slavs” appeared in Central Europe. According to historical records, a principality connected to these people later existed in Moravia and neighboring territories. However, the processes leading to the formation of this principality are still debated due to the limited number of written records in this region and period. This is connected to a general question concerning a possible demographic turnover in this and surrounding regions. The hypothesis is challenging to address due to the cremation burial rite in key periods of the turnover and an extremely low number of genetically studied Slavic-related inhumations predating 1000 CE.
To provide insights into a proposed population turnover between the 5th and early 8th centuries CE, we investigate Migration Period and Early Medieval genomic data from Czechia and Slovakia where such material is available. This chronological transect clearly identifies a genetic shift in the region. Our findings support the hypothesis that the observable change in the material culture in this period was propagated by a demographic turnover with a significant impact on the later genetic diversity of the region.
Importantly, we also present genetic data from the oldest known inhumation connected to the Prague material culture (in its earlier phases associated with Prague-type pottery) that already evidences this demographic shift and hence points at genetic continuity from the 7th to the 10th century CE, to the period clearly connected to the “Slavs”. In the later period, we show tight genetic connectivity of the sites allowing us to study social structure of the newly formed society, though there are also influences of genetic components present already in the region previously.

Denisa Zlámalová
Jiří Macháček
Marek Hladík
Marian Mazuch
Lumír Poláček
Šárka Krupičková
Matej Ruttkay


Ancient DNA connects large-scale migration with the spread of Slavic-associated culture

Today, speakers of Slavic languages comprise around one-third of the European population and inhabit nearly a half of the European continent. Yet, there is no consensus among historians and archaeologists how this present-day distribution is connected to the spread of Slavic-associated material culture in the fifth to sixth centuries over major parts of Eastern and Central Europe, as the evidence from the written and archaeological record is characterised by both continent-wide similarities as well as region-specific trajectories. Consequently, the question of to what extent this cultural and linguistic transformation also affected the genetic composition of the continent has been a subject of enduring debate. Here we present an extensive dataset of genome-wide ancient DNA data from several sites in Central Europe, dating between 400 and 1200 CE and spanning the relevant phase of cultural and linguistic transition. We demonstrate that the arrival of Slavic-associated material culture in the studied regions is associated with a substantial influx of genetic ancestry from a region in present-day northern Ukraine and Belarus. Comparing archaeological and genetic evidence, we find that this change in ancestry coincided with a change in social organization, characterised by an intensification of inter- and intrasite genetic relatedness and strong signals of patrilocality and -lineality.

Joscha Gretzinger
Hellen Mager
Ralf Schwarz
Arnold Muhl
Jörg Orschiedt
Felix Biermann
Mario Slaus
Harald Meller
Zuzana Hofmanová
Johannes Krause

The Gothic tribes of East-Central Europe through the lens of archaeogenomic data.

The migrations of Goths and their consequences were undoubtedly one of the most significant events shaping European history in the Roman Iron Age. They have always attracted the attention of academics and history enthusiasts alike. These events are not only associated with major historic processes but are also believed to have been accompanied by significant cultural and demographic transformations.

In the territories of modern-day Poland, the Goths are associated with the Wielbark archaeological culture. The presence of stone structures (stone circles and pavements) on its commentaries in Pomerania region, in its early stages, is frequently interpreted as evidence of its Scandinavian origin, where the best analogies for such structures can be found.

Here, through the analysis of more than 300 genomes (including more than 100 newly reported) of individuals dated to the Roman Iron Age, we show that the majority of them differ significantly from earlier and later populations from East-Central Europe. However, that lack of predating, first millennium BCE, genomic data from the Pomerania region hinder our ability to pinpoint the moment this population arrived or formed in this region. Nevertheless, our data show that when the population expanded south-east, somewhere in the 3rd century AD, with minimal admixture with local populations. Similarly, later early medieval populations from East-Central Europe seem primarily represent a population of different origin with only a small degree of admixture from Gothic tribes associated with Wielbark culture.

Maciej Chylenski
Anna Juras
Edvard Ehler
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(02-26-2024, 03:56 AM)FR9CZ6 Wrote: Ancient DNA samples from Iron Age, Roman Period and Migration Period Transylvania are coming. 

Contrasting genetic impacts of eastern migrants on Early Iron Age communities in Hungary and Transylvania
Content:
Ancient DNA from Iron Age nomads across the Eurasian steppe, including individuals from “Scythian” contexts, has revealed their varied genetic origins and high genetic diversity. However, little is known about their genetic impact and legacy on European communities. By analysing genomes of “Scythian” Age individuals from Transylvania (n=67, unpublished) and Hungary (n=7, previously published), we find ~40% eastern admixture in Transylvania but 0% in Hungary. In contrast to the trans-Eurasian migrations to the Pannonian Basin in the Avar period, the eastern ancestry in Transylvanian “Scythians” largely came from “Scythian” communities in neighbouring Moldova and Ukraine, which admixed into the pre-existing Balkan genetic substratum. In addition to eastern ancestry, we find multiple genetic outlier individuals from central/northern Europe and southern Balkans buried in “Scythian” contexts, implying a dynamic admixture process associated with the formation of these “Scythian” communities. From Transylvania, we reconstruct several families from “Scythian” burial contexts up to three generations deep, most consisting of members with and without eastern ancestry, documenting real-time admixture between locals and eastern migrants. Among these is also a case of siblings buried 11km apart. However, this eastern ancestry did not persist after the “Scythian” period, with subsequent “Celtic” Age associated individuals (n=6) carrying primarily the pre-existing local ancestry with limited evidence of additional central European or eastern gene flow.


https://submissions.e-a-a.org/eaa2024/re...tract=4077

Seeking for the Dacian Dream. Exploring ancient mobility in Roman Dacia
Content:
The province of Dacia, now part of modern-day Romania, was annexed into the Roman Empire by Trajan in 106 AD, drawing people from ancient Italy and other areas, attracted by the prospect of enhancing their livelihoods. Apulum was strategically selected by the Romans as the site for a legionary fort where the Legio XIII Gemina was stationed until the withdrawal of the Roman administration around 270 AD. Initially, a civilian settlement emerged near the castrum. The transformation into one of the most prominent Romano-Dacian settlements featuring two urban centres, still requires in-depth examination in terms of social and demographic change from a bioarchaeological perspective. This interdisciplinary research examines a sample of individuals buried in the Pitchforks Hill (Dealul Furcilor, ADF) biritual necropolis of the Roman Apulum, which is the largest identified in Dacia so far with its over 1000 burials, being utilised throughout the Roman rule. Teeth samples from 34 Roman-era individuals from ADF necropolis were collected for Whole Genome Sequencing (WGS) analysis. After applying rigorous quality controls, 21 samples were chosen for the downstream analyses, with their genetic variants being filtered using the 1240K SNP panel. PCA, F statistics, and Admixture modeling were utilised to assess the genome-wide variation of the ADF group in relation to coeval and current-day populations. The genetic diversity within the ADF group aligns with the broader European genetic landscape. However, it is possible to distinguish two primary clusters: the majority of the samples share genetic similarities with Mediterranean populations, while a minority shows closer ties to Eastern European groups. These findings significantly enhance our understanding of the Romanisation in the region, revealing the genetic imprints left by legionaries and other Italic peoples who settled in Apulum compared to those who migrated from nearby regions, whose genomic makeup is anticipated to be markedly distinct.


https://submissions.e-a-a.org/eaa2024/re...tract=3191

Multidisciplinary bio-archaeological approach to study the population transformations during the Migration Period in the Eastern Carpathian Basin.
Content:
Archaeological and historical sources describe a relatively stable scenario in the Tisza region at the beginning of the first millennium, with four centuries of continuous presence of “Sarmatian” communities reported in Roman written sources as in archaeological finds.
With the beginning of the 5th century, the fall of the Western Roman Empire and the extension of the Hunnic influence to this region, two centuries of power instability are reported in historical sources. This is also reflected in changes in settlement structure and burial tradition, but it is questionable whether the changes from the Sarmatian period were mostly cultural or involved a significant change in genetic structure.
In particular, during both the 5th and 6th century, the ethnonym “Gepid” appears for the first time to describe one of the populations in this region. This term was used to identify one of the “Germanic” peoples that allied with Attila during the Hunnic empire in Europe, but also to denote the kingdom at the Eastern part of the Carpathian Basin that played an important role between the centuries, appearing in both the history of the Eastern Roman Empire and of the Langobards Kingdom in the Eastern part of the Carpathian Basin.
A comprehensive analysis of these transition periods through a deep sampling of entire cemeteries in the frame of the HistoGenes project is presented, combining genome-wide analyses of more than 500 individuals with isotopic and archaeological analysis of the sites.
Multiple lines of evidence point at an increase in short- and long-scale mobility, emerging also from an increase in genetic diversity, highlighting a compound scenario of continuity and discontinuity.
Thanks to the sampling strategy, these observations emerge both as overall patterns and single stories of burials and cemeteries, narrowing the distance between large-scale and small-scale events in the history of this region.



https://submissions.e-a-a.org/eaa2024/re...tract=4379

When are these studies coming out ?
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(02-28-2024, 10:47 PM)Ioas Wrote: When are these studies coming out ?

That's a good question oftentimes not even the authors themselves can answer, because the publishing process can become quite a drawn out thing. Like some of the papers were first to be scheduled that they being published last year...
I'm not very patient and pretty annoyed by this, but the papers are out when they are out and not earlier. Long term schedules for publishing being very often revisited.
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Would any kind soul like to compile a list of the haplogroups from the Avar paper? I'm sure I'm not alone in being unfamiliar with BAM files nor have the savvy or right software/whatever to view them, unless there's a good way to access them?
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U152>Z56>Z43>Z46>Z48>Z44>CTS8949>FTC82256 Lindeman
M222...>DF105>ZZ87>S588>S7814 Toner 
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I'm looking for G25 coordinates for samples I32305, I10943 and I10949. Does anyone have them?
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(03-01-2024, 05:31 PM)Tomenable Wrote: I'm looking for G25 coordinates for samples I32305, I10943 and I10949. Does anyone have them?

I don't have the first one, but here are the others:

ITA_Sicily_Himera_480BCE_3:I10943,0.126344,0.118817,0.07731,0.082042,0.035083,0.029562,0.005405,0.011999,-0.015339,-0.043919,-0.000812,-0.012289,0.016353,0.015276,-0.012215,0.014452,0.025816,-0.005701,-0.009679,0.008004,-0.001248,-0.00643,0.008504,-0.016147,-0.000958

ITA_Sicily_Himera_480BCE_3:I10949,0.125205,0.111708,0.078441,0.083011,0.034776,0.032351,0.015746,0.006692,-0.003886,-0.022962,-0.003573,-0.011989,0.007879,0.018579,-0.014658,0.003845,0.002868,0.005448,0.003897,0.012256,-0.000749,-0.011252,0.008134,-0.017713,0.003353
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Thanks! It seems Davidski has removed these samples from the official spreadsheet even though he wrote about them on his blog before:

https://eurogenes.blogspot.com/2022/10/b...le-of.html
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(03-01-2024, 05:31 PM)Tomenable Wrote: I'm looking for G25 coordinates for samples I32305, I10943 and I10949. Does anyone have them?

I think sample I32305 very low coverage SNP
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
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(03-01-2024, 05:44 PM)Capsian20 Wrote:
(03-01-2024, 05:31 PM)Tomenable Wrote: I'm looking for G25 coordinates for samples I32305, I10943 and I10949. Does anyone have them?

I think sample I32305 very low coverage SNP

I don't think so. Its K36 results look rather good (not too noisy):

https://genarchivist.com/showthread.php?...3#pid11623

I32305

Amerindian 0.24
Arabian 0
Armenian 0
Basque 1.14
Central African 0
Central Euro 7.51
East African 0
East Asian 0
East Balkan 6.02
East Central Asian 0
East Central Euro 24.23
East Med 0
Eastern Euro 18.94
Fennoscandian 14.54
French 3.17
Iberian 2.43
Indo-Chinese 0
Italian 0
Malayan 0
Near Eastern 0
North African 0
North Atlantic 7.59
North Caucasian 0
North Sea 11.08
Northeast African 0
Oceanian 0
Omotic 0
Pygmy 0
Siberian 0
South Asian 1.55
South Central Asian 0.95
South Chinese 0
Volga-Ural 0.61
West African 0
West Caucasian 0
West Med 0

Edit:

Davidski says that this sample has too low coverage for G25.
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(03-01-2024, 04:54 PM)Manofthehour Wrote: Would any kind soul like to compile a list of the haplogroups from the Avar paper? I'm sure I'm not alone in being unfamiliar with BAM files nor have the savvy or right software/whatever to view them, unless there's a good way to access them?

I have processed around 150. Take my results with a grain of salt because the code I'm using for batch processing is still under testing. I will update with the remaining samples tomorrow.

Quote:SAMEA115300953: https://www.yfull.com/tree/Q-L715
SAMEA115300965: https://www.yfull.com/tree/N-Z4762
SAMEA115300969: https://www.yfull.com/tree/N
SAMEA115300974: https://www.yfull.com/tree/N-CTS1678
SAMEA115300981: https://www.yfull.com/tree/N-CTS6967
SAMEA115300982: https://www.yfull.com/tree/N-F4205
SAMEA115300990: https://www.yfull.com/tree/N-F4205
SAMEA115300999: https://www.yfull.com/tree/N-F4205
SAMEA115301002: https://www.yfull.com/tree/N-Y16313
SAMEA115301007: https://www.yfull.com/tree/N-Y16313
SAMEA115301010: https://www.yfull.com/tree/N-Y16313
SAMEA115301011: https://www.yfull.com/tree/N-Y16313
SAMEA115301012: https://www.yfull.com/tree/N-Y16313
SAMEA115301020: https://www.yfull.com/tree/R-CTS1211
SAMEA115301022: https://www.yfull.com/tree/N-CTS6967
SAMEA115301023: https://www.yfull.com/tree/I-CTS616
SAMEA115301024: https://www.yfull.com/tree/N-L708
SAMEA115301025: https://www.yfull.com/tree/N-F4205
SAMEA115301027: https://www.yfull.com/tree/N-F4205
SAMEA115301028: https://www.yfull.com/tree/I-Y5669
SAMEA115301029: https://www.yfull.com/tree/I-Y3979
SAMEA115301037: https://www.yfull.com/tree/N-F4205
SAMEA115301039: https://www.yfull.com/tree/E-V13
SAMEA115301040: https://www.yfull.com/tree/N-F4205
SAMEA115301041: https://www.yfull.com/tree/R-Y174827
SAMEA115301078: https://www.yfull.com/tree/J
SAMEA115301085: https://www.yfull.com/tree/J
SAMEA115301126: https://www.yfull.com/tree/J-M102
SAMEA115301135: https://www.yfull.com/tree/J-BY78446/
SAMEA115301139: https://www.yfull.com/tree/N-Y9023
SAMEA115301141: https://www.yfull.com/tree/J1
SAMEA115301150: https://www.yfull.com/tree/J-Z597
SAMEA115301154: https://www.yfull.com/tree/R-YP5505
SAMEA115301167: https://www.yfull.com/tree/J-Z2331
SAMEA115301175: https://www.yfull.com/tree/J-Z597
SAMEA115301177: https://www.yfull.com/tree/J-Z597
SAMEA115301188: https://www.yfull.com/tree/J-Z1297
SAMEA115301211: https://www.yfull.com/tree/E-CTS9320
SAMEA115301216: https://www.yfull.com/tree/J-Z1297
SAMEA115301217: https://www.yfull.com/tree/J-Z631
SAMEA115301218: https://www.yfull.com/tree/J-Z2331
SAMEA115301234: https://www.yfull.com/tree/J-Z597
SAMEA115301241: https://www.yfull.com/tree/J-Z631
SAMEA115301243: https://www.yfull.com/tree/J-Z631
SAMEA115301245: https://www.yfull.com/tree/J-Z597
SAMEA115301282: https://www.yfull.com/tree/J-Z631
SAMEA115301297: https://www.yfull.com/tree/J-Z597
SAMEA115301298: https://www.yfull.com/tree/J-Z631
SAMEA115301301: https://www.yfull.com/tree/I-Y3979
SAMEA115301310: https://www.yfull.com/tree/J-Z631
SAMEA115301313: https://www.yfull.com/tree/J-Z631
SAMEA115301314: https://www.yfull.com/tree/R-CTS1211
SAMEA115301321: https://www.yfull.com/tree/J-Z631
SAMEA115301322: https://www.yfull.com/tree/J-Z1297
SAMEA115301334: https://www.yfull.com/tree/J-Z631
SAMEA115301336: https://www.yfull.com/tree/R-YP1548
SAMEA115301345: https://www.yfull.com/tree/J-Z631
SAMEA115301352: https://www.yfull.com/tree/E-V13
SAMEA115301359: https://www.yfull.com/tree/J-BY78446
SAMEA115301360: https://www.yfull.com/tree/R-CTS3402
SAMEA115301361: https://www.yfull.com/tree/J-Z631
SAMEA115301362: https://www.yfull.com/tree/J-Z631
SAMEA115301370: https://www.yfull.com/tree/J-BY78446
SAMEA115301373: https://www.yfull.com/tree/J-Z631
SAMEA115301375: https://www.yfull.com/tree/J-Z631
SAMEA115301376: https://www.yfull.com/tree/J-Z631
SAMEA115301382: https://www.yfull.com/tree/J-Z631
SAMEA115301383: https://www.yfull.com/tree/E-BY3880
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(03-02-2024, 02:26 PM)fj-blanco Wrote:
(03-01-2024, 04:54 PM)Manofthehour Wrote: Would any kind soul like to compile a list of the haplogroups from the Avar paper? I'm sure I'm not alone in being unfamiliar with BAM files nor have the savvy or right software/whatever to view them, unless there's a good way to access them?

I have processed around 150. Take my results with a grain of salt because the code I'm using for batch processing is still under testing. I will update with the remaining samples tomorrow.

Quote:SAMEA115300953: https://www.yfull.com/tree/Q-L715
SAMEA115300965: https://www.yfull.com/tree/N-Z4762
SAMEA115300969: https://www.yfull.com/tree/N
SAMEA115300974: https://www.yfull.com/tree/N-CTS1678
SAMEA115300981: https://www.yfull.com/tree/N-CTS6967
SAMEA115300982: https://www.yfull.com/tree/N-F4205
SAMEA115300990: https://www.yfull.com/tree/N-F4205
SAMEA115300999: https://www.yfull.com/tree/N-F4205
SAMEA115301002: https://www.yfull.com/tree/N-Y16313
SAMEA115301007: https://www.yfull.com/tree/N-Y16313
SAMEA115301010: https://www.yfull.com/tree/N-Y16313
SAMEA115301011: https://www.yfull.com/tree/N-Y16313
SAMEA115301012: https://www.yfull.com/tree/N-Y16313
SAMEA115301020: https://www.yfull.com/tree/R-CTS1211
SAMEA115301022: https://www.yfull.com/tree/N-CTS6967
SAMEA115301023: https://www.yfull.com/tree/I-CTS616
SAMEA115301024: https://www.yfull.com/tree/N-L708
SAMEA115301025: https://www.yfull.com/tree/N-F4205
SAMEA115301027: https://www.yfull.com/tree/N-F4205
SAMEA115301028: https://www.yfull.com/tree/I-Y5669
SAMEA115301029: https://www.yfull.com/tree/I-Y3979
SAMEA115301037: https://www.yfull.com/tree/N-F4205
SAMEA115301039: https://www.yfull.com/tree/E-V13
SAMEA115301040: https://www.yfull.com/tree/N-F4205
SAMEA115301041: https://www.yfull.com/tree/R-Y174827
SAMEA115301078: https://www.yfull.com/tree/J
SAMEA115301085: https://www.yfull.com/tree/J
SAMEA115301126: https://www.yfull.com/tree/J-M102
SAMEA115301135: https://www.yfull.com/tree/J-BY78446/
SAMEA115301139: https://www.yfull.com/tree/N-Y9023
SAMEA115301141: https://www.yfull.com/tree/J1
SAMEA115301150: https://www.yfull.com/tree/J-Z597
SAMEA115301154: https://www.yfull.com/tree/R-YP5505
SAMEA115301167: https://www.yfull.com/tree/J-Z2331
SAMEA115301175: https://www.yfull.com/tree/J-Z597
SAMEA115301177: https://www.yfull.com/tree/J-Z597
SAMEA115301188: https://www.yfull.com/tree/J-Z1297
SAMEA115301211: https://www.yfull.com/tree/E-CTS9320
SAMEA115301216: https://www.yfull.com/tree/J-Z1297
SAMEA115301217: https://www.yfull.com/tree/J-Z631
SAMEA115301218: https://www.yfull.com/tree/J-Z2331
SAMEA115301234: https://www.yfull.com/tree/J-Z597
SAMEA115301241: https://www.yfull.com/tree/J-Z631
SAMEA115301243: https://www.yfull.com/tree/J-Z631
SAMEA115301245: https://www.yfull.com/tree/J-Z597
SAMEA115301282: https://www.yfull.com/tree/J-Z631
SAMEA115301297: https://www.yfull.com/tree/J-Z597
SAMEA115301298: https://www.yfull.com/tree/J-Z631
SAMEA115301301: https://www.yfull.com/tree/I-Y3979
SAMEA115301310: https://www.yfull.com/tree/J-Z631
SAMEA115301313: https://www.yfull.com/tree/J-Z631
SAMEA115301314: https://www.yfull.com/tree/R-CTS1211
SAMEA115301321: https://www.yfull.com/tree/J-Z631
SAMEA115301322: https://www.yfull.com/tree/J-Z1297
SAMEA115301334: https://www.yfull.com/tree/J-Z631
SAMEA115301336: https://www.yfull.com/tree/R-YP1548
SAMEA115301345: https://www.yfull.com/tree/J-Z631
SAMEA115301352: https://www.yfull.com/tree/E-V13
SAMEA115301359: https://www.yfull.com/tree/J-BY78446
SAMEA115301360: https://www.yfull.com/tree/R-CTS3402
SAMEA115301361: https://www.yfull.com/tree/J-Z631
SAMEA115301362: https://www.yfull.com/tree/J-Z631
SAMEA115301370: https://www.yfull.com/tree/J-BY78446
SAMEA115301373: https://www.yfull.com/tree/J-Z631
SAMEA115301375: https://www.yfull.com/tree/J-Z631
SAMEA115301376: https://www.yfull.com/tree/J-Z631
SAMEA115301382: https://www.yfull.com/tree/J-Z631
SAMEA115301383: https://www.yfull.com/tree/E-BY3880
Wow, if mostly correct that's at least 25 J2b-L283 samples and clade Z631 seems to dominate. Looking forward to further analysis of these samples to rule out mixing of male and female samples or maybe false positive reads. Thank you.
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Here is the Excel sheet with additional Avar samples. Around 50 are still missing; I will update the link tomorrow. Now, I have included the next best prediction along with their scores. The predictions come from (my fork of) CladeFinder, after some post-processing of the .vcf files, without manual verification. The predictions are conservative. I expect most females and very low-quality samples to be excluded from the file. Perhaps this approach is suboptimal compared to, for example, YLeaf, but it is part of a experimentation.
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(03-02-2024, 11:10 PM)fj-blanco Wrote: Here is the Excel sheet with additional Avar samples. Around 50 are still missing; I will update the link tomorrow. Now, I have included the next best prediction along with their scores. The predictions come from (my fork of) CladeFinder, after some post-processing of the .vcf files, without manual verification. The predictions are conservative. I expect most females and very low-quality samples to be excluded from the file. Perhaps this approach is suboptimal compared to, for example, YLeaf, but it is part of a experimentation.

Nice, thanks, why the J1 samples do not have any other SNPs/branch there ?
Reply
(03-02-2024, 11:10 PM)fj-blanco Wrote: Here is the Excel sheet with additional Avar samples. Around 50 are still missing; I will update the link tomorrow. Now, I have included the next best prediction along with their scores. The predictions come from (my fork of) CladeFinder, after some post-processing of the .vcf files, without manual verification. The predictions are conservative. I expect most females and very low-quality samples to be excluded from the file. Perhaps this approach is suboptimal compared to, for example, YLeaf, but it is part of a experimentation.

I modified karyo_RxRy to get sex estimates.

https://github.com/teepean/karyo_RxRy/tr...l_samtools

Code:
Filename    Na    Rx    RxSE    Ry    RySE    Assignment
HNJ001    65788    0.027923025475770656    0.0006423300240947971    0.008116981820392777    0.00034982768184039305    XY
HNJ005    31534    0.03672226802816008    0.0010591341633474417    0.004249381619838904    0.0003663098764628275    XXY
HNJ006    281858    0.043270015397824435    0.0003832419440629881    0.0002660914361132201    3.072150427331807e-05    XX
HNJ004    939354    0.04343942752146688    0.00021032148530547    0.00017884631353036235    1.3797058710991787e-05    XX
HNJ007    390240    0.04425225502255022    0.0003292103290049977    0.00022293972939729396    2.38989833780558e-05    XX
HNJ009    48666    0.04604857600789052    0.0009500761298115854    0.000924670200961657    0.00013777795128172996    Contamination
HNJ008    400808    0.041216742180794796    0.0003139994309928138    0.00017714217281092194    2.1021046054177857e-05    XX
HNJ011    2870323    0.022652851264474416    8.78254687409879e-05    0.009032432935248054    5.5842738505294656e-05    XY
HNJ003    6420203    0.042160193377063    7.930916142628789e-05    0.00010716172058733969    4.085283385395221e-06    XX
HNJ013    1826098    0.04324138134974136    0.0001505181704018845    0.00013580870249022778    8.623275614409156e-06    XX
HNJ012    4162808    0.021645005006236177    7.132370389956545e-05    0.010091985986382269    4.898832035767795e-05    XY
HNJ010    7480144    0.0414490683601813    7.288027526634899e-05    0.00011563948501526174    3.931633102370322e-06    XX
HNJ016    1610289    0.022474847682620945    0.00011680473161485175    0.009111407952237145    7.487782953991997e-05    XY
HNJ002    11467722    0.022310969868296424    4.361350778408476e-05    0.009809446025984934    2.9103354700196744e-05    XY
HNJ014    4357234    0.02174452875379197    6.987079759876716e-05    0.010111690122678745    4.792912845275043e-05    XY
KFJ001    489728    0.023167962624150547    0.00021496927990890646    0.008386287898588604    0.0001303102799761521    XY
KFJ002    34233    0.027546519440306137    0.000884596677428407    0.00689393275494406    0.0004472072740746601    XY
KFJ003    179352    0.04509567777331728    0.0004899979655714091    0.0002509032517061421    3.739775594705179e-05    XX
HNJ015    7255184    0.04254061647506114    7.492691540508387e-05    7.787535092149283e-05    3.2761130650869354e-06    XX
HNJ025    9275445    0.022176078883546828    4.83509854954405e-05    0.0097933845761578    3.2334186505420265e-05    XY
KFJ005    4114514    0.04392110465537363    0.00010102392105820112    5.8330096823099884e-05    3.7650817460467014e-06    XX
KFJ004    6459382    0.04408455793448971    8.077137931468521e-05    7.787122669010751e-05    3.4719711948061114e-06    XX
HNJ026    10276867    0.042621939157138064    6.301268273283142e-05    7.375788749625737e-05    2.678908312567766e-06    XX
KFJ008    2822627    0.04756278459746895    0.00012668496301140834    9.03413734793864e-05    5.657140702032782e-06    XX
KFJ009    2381220    0.045181041650918435    0.00013459808335276305    9.07098042180059e-05    6.171740478988537e-06    XX
KFJ007    5748749    0.023080847676598855    6.262799610365172e-05    0.008654230685667438    3.8631372580763106e-05    XY
KFJ010    5760398    0.02096157244690384    5.968779740975861e-05    0.010380359134906997    4.222932087529769e-05    XY
KFJ006    11542871    0.04361817783461324    6.0116334848675716e-05    6.939348104990517e-05    2.4518130189575025e-06    XX
KFJ012    7147866    0.02288878946527537    5.593648975443151e-05    0.00867601603051876    3.468804137591452e-05    XY
KFJ014    1767511    0.045521640317938615    0.00015678731831024522    0.0002941990177147412    1.2899582446916262e-05    XX
KFJ016    280157    0.02388660643853268    0.0002884872500470174    0.00894855384659316    0.00017791959796756564    XY
KFJ011    15410552    0.044353115968850436    5.24447107436261e-05    9.707634093833887e-05    2.5097272180112686e-06    XX
KFJ013    11905994    0.022659426839959772    4.312852392929358e-05    0.008874857487749448    2.7180792236051623e-05    XY
KFJ019    654831    0.04139541347309458    0.00024616780219217195    0.002687716372621333    6.397977184880491e-05    Contamination
KFJ020    1837514    0.022987579958574464    0.00011055575134384649    0.008721021989492326    6.859086985928125e-05    XY
KFJ017    13081773    0.021982341384459123    4.053937210258524e-05    0.009073311392882295    2.6216237711235733e-05    XY
KFJ015    14372971    0.04422252017345613    5.42284094353475e-05    9.629185225518093e-05    2.588216402883443e-06    XX
KFJ023    6089715    0.04353060857527816    8.26864646548068e-05    0.00010706576580348998    4.1927945246740374e-06    XX
KFJ018    13466908    0.022665707673951586    4.0557601498261245e-05    0.0091831027582575    2.599306408965053e-05    XY
KFJ021    11067498    0.022115748292884263    4.4204839614627436e-05    0.00920090520910869    2.8700096217824374e-05    XY
KFJ026    655771    0.04070018344818542    0.00024400530048413512    0.000158591947493866    1.5549986705246466e-05    XX
KFJ024    3849857    0.02129767417335241    7.358157852064672e-05    0.010824557899163527    5.273748897775508e-05    XY
KFJ022    11714541    0.044783402098298175    6.042919838156052e-05    0.00010585135175163926    3.0058172973769627e-06    XX
KFJ027    3929963    0.04204899639004235    0.00010124072229152996    0.00014580289941661028    6.0905594457387245e-06    XX
KFJ028    2515864    0.045213890734952286    0.000130992190869855    9.102240820648493e-05    6.014656287167848e-06    XX
KFJ030    4429926    0.021954091332451152    6.962081739044782e-05    0.010269471769957331    4.789986617349755e-05    XY
KFJ025    9972819    0.02193351749390017    4.637985241550013e-05    0.010108475848203001    3.1675805912642906e-05    XY
KFJ029    7783337    0.04242511920015798    7.224619695936651e-05    0.00011164876967295647    3.7872136673285277e-06    XX
KFJ031    7259657    0.04271331276395014    7.504894414979885e-05    7.066449558154057e-05    3.119803460936399e-06    XX
KFJ035    60659    0.04299444435285778    0.0008235989354311623    0.0008077943915989383    0.00011535257997054632    Contamination
KFJ034    2063126    0.042668261657310316    0.00014070866007014098    8.191453163791257e-05    6.300859736458255e-06    XX
KFJ037    1516905    0.04213315929474819    0.00016311180392902306    0.00015228376200223482    1.0018772997062621e-05    XX
KFJ032    9104188    0.04319495599168207    6.737637439728105e-05    6.788084780323077e-05    2.7304754723248866e-06    XX
KFJ039    2803986    0.04270848713224674    0.00012075115058519555    0.00016048582268242422    7.56476714152399e-06    XX
KFJ036    8755750    0.04216497730063101    6.791639341764073e-05    8.188904434228935e-05    3.0580771824212414e-06    XX
KFJ033    14709667    0.02237175049577941    3.8559858735449545e-05    0.008914613770658438    2.4507859480340157e-05    XY
KFJ042    960805    0.044056806532022624    0.00020936540540820474    0.0004860507595193614    2.248628007116746e-05    XX
KFJ038    10388592    0.043868793769165255    6.354161486353176e-05    0.00010463400622529021    3.173477033609189e-06    XX
KFJ044    781051    0.02399331157632472    0.00017315370849303976    0.007991795670193112    0.00010074885552155049    XY
KFJ041    7098965    0.04424785866672114    7.718292828893069e-05    0.00014002041142617268    4.440866830340302e-06    XX
KFJ040    8671213    0.021642416118713724    4.9415335945133894e-05    0.009645824638375277    3.319135805637244e-05    XY
KFJ046    1942899    0.04492616445836865    0.00014860828857760783    8.338055658065603e-05    6.550722101191843e-06    XX
KFJ043    8427362    0.04654077990241786    7.256414206984886e-05    9.575950338907953e-05    3.3707327671842057e-06    XX
KFJ045    10958161    0.044726300334517806    6.244196477208704e-05    0.0001378881000197022    3.5470279542680597e-06    XX
KFJ048    6174968    0.022576311326633597    5.977926447461286e-05    0.009774139720238226    3.959032325551578e-05    XY
KFJ049    4095803    0.045175756744159815    0.00010262304739199198    0.00012988905960564998    5.631039184986733e-06    XX
KFJ047    11646600    0.044084367970051344    6.015233787121067e-05    0.0001344598423574262    3.397563006772584e-06    XX
KFJ050    3955572    0.022641731714149054    7.479577537937265e-05    0.008845496934450947    4.707899142442124e-05    XY
KFJ054    601618    0.047601634259613244    0.0002745110566967651    0.00016788061527414405    1.6703343310973043e-05    XX
KUP001    3070266    0.02186585787680937    8.346309168263887e-05    0.009351632724982135    5.493074427211579e-05    XY
KFJ051    8300532    0.04439390149932559    7.149046951141303e-05    0.0001291483485636824    3.944240775125815e-06    XX
KFJ052    8155578    0.04396316239020705    7.17884213094429e-05    0.0001373293223361974    4.103216598918424e-06    XX
KUP003    2796465    0.022762666437806302    8.918809712157592e-05    0.009225933455272997    5.717257857598594e-05    XY
KFJ053    9712617    0.04456430228845634    6.621039150092844e-05    5.374452632076401e-05    2.3522707989170225e-06    XX
KUP006    83654    0.024828460085590646    0.0005379873268251123    0.0077342386496760465    0.0003028861614585462    XY
KUP002    8508416    0.021833911270911062    5.010115223952631e-05    0.009339341188771211    3.297586688137594e-05    XY
KUP008    55401    0.04276096099348387    0.0008595578828366573    0.0005415064710023285    9.883833139638133e-05    Consistent_with_XX
KUP004    7813305    0.0443972173107283    7.3688410612597e-05    0.00010686898821945387    3.6981562155344084e-06    XX
KUP005    5725552    0.02271396714238208    6.226566932799573e-05    0.009094494295047884    3.9673152941349714e-05    XY
KUP009    2781832    0.021540121761486675    8.704225599721629e-05    0.009354626735187459    5.771741739205879e-05    XY
KUP010    3213923    0.023589861984870203    8.465665535333399e-05    0.008112515452299261    5.0036997296195035e-05    XY
KUP013    24067    0.029417875098682843    0.0010892079818134834    0.009348900984750904    0.0006203398260444023    XY
KUP007    7261856    0.042943842455702784    7.523074194460387e-05    9.474161977323704e-05    3.6118192846404826e-06    XX
KUP015    1739045    0.022398500326328532    0.00011221088567830763    0.00938503603989546    7.311643438709302e-05    XY
KUP012    5191543    0.022555336631132593    6.516621827366874e-05    0.00896457950940597    4.1367694964945724e-05    XY
KUP011    7783409    0.022141198027753647    5.274164930450087e-05    0.008760814188230376    3.340231287544909e-05    XY
KUP014    6230591    0.02256094165063956    5.9492036283714306e-05    0.008645889290438098    3.708981091076336e-05    XY
KUP019    3700233    0.04225544715697633    0.00010458072789175408    0.0001194519372158456    5.681409883525185e-06    XX
KUP017    6466100    0.04787615409597748    8.396245736124228e-05    0.00022965930004175623    5.958966369406433e-06    XX
KUP018    7665026    0.04383194525367559    7.39444650364941e-05    0.00011363301311698095    3.850088997751323e-06    XX
KUP022    3792563    0.02144090948522147    7.437872470561668e-05    0.009287386920138176    4.925544121371044e-05    XY
KUP016    14694215    0.043924700979262925    5.3459791527816514e-05    0.00010466704073677975    2.6687571038619027e-06    XX
KUP021    7471758    0.022234526332357125    5.3941111499035364e-05    0.008917446202085238    3.4392501586317496e-05    XY
KUP020    8994266    0.043618011742147716    6.810292466690733e-05    8.738900984249299e-05    3.1169265513524204e-06    XX
KUP024    1632670    0.043686721750261844    0.00015996523738721414    9.738648961517024e-05    7.722874922375214e-06    XX
KUP026    5086537    0.021037102453004865    6.36304468717765e-05    0.010326278959535732    4.482361114319665e-05    XY
KUP023    8188950    0.043387247449306686    7.119262766724297e-05    0.00012785521953363984    3.9510939471706165e-06    XX
RKC001    2326078    0.0434615692165095    0.00013368779991229402    0.00014401924613018137    7.868045344033585e-06    XX
KUP025    8988704    0.02129962228147684    4.815731770116515e-05    0.010030589504337889    3.3237287737169134e-05    XY
KUP027    8974130    0.02180768497893389    4.8755175887777016e-05    0.009976008816453517    3.317455403675285e-05    XY
RKC005    211653    0.02308495509158859    0.00032642296229729256    0.009099800144576264    0.00020640426679229213    XY
RKC006    3821311    0.04291485304388991    0.00010367472947957631    8.37408941590988e-05    4.681062285427646e-06    XX
RKC004    5718798    0.0427782201784361    8.461848845291834e-05    7.728896876581408e-05    3.676119277542554e-06    XX
RKC008    1674518    0.0455743085472954    0.00016117073802593637    0.00015287981377327684    9.55425795049188e-06    XX
RKC002    10542765    0.02193267136277817    4.5107927999036096e-05    0.009786996105860275    3.0318782490968512e-05    XY
RKC007    6921651    0.046010265469900176    7.963323731970608e-05    0.00010026509571199126    3.805820175810748e-06    XX
RKC003    13717449    0.02179093211864684    3.942004075861877e-05    0.009328556643440044    2.595585692524998e-05    XY
RKC009    7544902    0.021814862538970022    5.318142483188525e-05    0.01002796325253794    3.6273630860099664e-05    XY
RKC011    6821406    0.02181676328897591    5.593302636919677e-05    0.009432219691952069    3.700940502440064e-05    XY
RKC010    11183889    0.04339751583729059    6.092587334278693e-05    0.0001233917825901169    3.3213901953666223e-06    XX
RKC012    8625059    0.022144080405710847    5.010547944892936e-05    0.00947158738276457    3.298099977950552e-05    XY
RKC015    3638909    0.04141048869317699    0.00010444458212864893    0.00012641151509971808    5.893594737930602e-06    XX
RKC013    10419471    0.04017929509089281    6.083778286918334e-05    8.129011540029239e-05    2.793047890224776e-06    XX
RKC014    10094072    0.04278392307881299    6.369599048817372e-05    0.00011085714466867286    3.3137868592022463e-06    XX
RKC016    9089963    0.02226961759910354    4.894235665494306e-05    0.009274185164450064    3.179315030557652e-05    XY
RKC017    9749061    0.043321710675520445    6.520101612441475e-05    0.00011077989972572744    3.3707382793475277e-06    XX
RKC019    2952025    0.043263861247787534    0.0001184128168558843    7.24926110043106e-05    4.955313248018164e-06    XX
RKC018    11041728    0.021573706579260058    4.372279524335589e-05    0.00945477012293728    2.9123537142309387e-05    XY
RKC022    7309241    0.022346643105624783    5.467168429246341e-05    0.009141988887765502    3.520383008902307e-05    XY
RKC021    9256753    0.02176789204594743    4.796227848274489e-05    0.009483887060614019    3.1856247830196274e-05    XY
RKC025    229254    0.024584085773857817    0.0003234174799314618    0.008087099897929807    0.0001870573218660623    XY
RKC020    12753272    0.022032228278358684    4.1103676770215026e-05    0.009650621424839053    2.7375436029070036e-05    XY
RKC024    3381063    0.043076984960055464    0.00011041663755227669    0.00011179915902188158    5.7500068034241986e-06    XX
RKC027    1691656    0.023078569165362224    0.00011544582498434831    0.009307447849917477    7.382929614335745e-05    XY
RKC029    4061916    0.04671293054804678    0.00010470440157260071    0.00011300085969281492    5.2741304276362365e-06    XX
RKC026    7376062    0.021869122032867946    5.385200522653727e-05    0.009586416166241552    3.5877663657587004e-05    XY
RKC023    14248106    0.04347946316513928    5.402697693376646e-05    0.00010611936772508571    2.7289508471787105e-06    XX
RKC030    3513537    0.022178790204856247    7.856450659694572e-05    0.00984933416098934    5.268437257248924e-05    XY
RKC033    2151807    0.0220252095099607    0.00010005117564106862    0.009350280949917905    6.561010496725837e-05    XY
RKC034    556681    0.0412983378272296    0.00026668883062376904    0.00016346884481417543    1.7134790455586645e-05    XX
RKC028    13413307    0.02184591763984825    3.991359530281521e-05    0.009313363214604721    2.6227294346738818e-05    XY
RKC036    3713778    0.02178940152050015    7.575841210383682e-05    0.009456408002847774    5.0221759933770566e-05    XY
RKC031    12179040    0.02191937952416611    4.195608211471455e-05    0.009474884719977929    2.7759598779285377e-05    XY
RKC032    11943465    0.04242855821154079    5.832430321451283e-05    8.975619721747416e-05    2.7412431553357114e-06    XX
RKC035    9107898    0.02147542715124829    4.8033882831270374e-05    0.010404596098902293    3.3622683195271316e-05    XY
RKC040    6461922    0.04303410038066074    7.983139894024805e-05    0.00010260105275179737    3.98449028307504e-06    XX
RKC038    13263789    0.02190354505790163    4.0189651974204114e-05    0.009570568409976969    2.6732946693115946e-05    XY
RKC037    14728148    0.04308294566295776    5.290732110335225e-05    0.0001315847722334132    2.9888228276182544e-06    XX
RKC039    12735925    0.022112881475040095    4.1205177116764034e-05    0.009386675879451238    2.702046055153839e-05    XY
RKC044    558139    0.04344795830429338    0.00027287754741819794    0.0001917085170539955    1.8531385302053984e-05    XX
RKC041    8571088    0.0214952874127532    4.953761710393867e-05    0.009521078304177952    3.317017099371732e-05    XY
RKC045    10391697    0.021727538822581143    4.5226392116057286e-05    0.009588424296820818    3.023000632988568e-05    XY
RKC043    12483329    0.021717364014038242    4.125442322622002e-05    0.009056238123660763    2.6812247052111502e-05    XY
RKC042    13177534    0.02228914757495598    4.066632011806245e-05    0.0091716705113415    2.626070355594328e-05    XY
RKC046    9403158    0.022154152892039036    4.7998305470303475e-05    0.009219881235644451    3.116839494266437e-05    XY
RKC048    5136811    0.04235935486043773    8.886467571023034e-05    0.00010901705357662566    4.606560216069411e-06    XX
RKC047    6740479    0.023079368691750247    5.783573021994558e-05    0.008508149049941406    3.537665280148155e-05    XY
RKC050    6142387    0.022065363188610552    5.9270947034819116e-05    0.00913895526283186    3.839600726717006e-05    XY
RKF002    4096215    0.04991705757632351    0.00010760039791040406    0.00016820406155438619    6.407525441362452e-06    XX
RKC051    7545942    0.021513682453429935    5.2817522284946885e-05    0.009763260836089119    3.5793999877979933e-05    XY
RKC049    12788260    0.041509321831116976    5.5777755862365765e-05    0.0001310577044883354    3.201084135661177e-06    XX
RKF005    1015741    0.04887072590355219    0.00021392063438563185    0.00013093889091805885    1.1353098417289122e-05    XX
RKC052    9034410    0.02189816490506851    4.86906979470392e-05    0.00921266579665966    3.1785788076299065e-05    XY
RKF003    4690428    0.04737606035099569    9.809208829412479e-05    0.00012706729535129843    5.204548524822163e-06    XX
RKF007    2716836    0.02463453811713331    9.404250455182288e-05    0.016263035383806752    7.673766622000062e-05    XY
RKF009    298254    0.04813347012948695    0.00039193899622007593    0.0002145822017475038    2.681989721895615e-05    XX
RKF004    4535342    0.04747536128477191    9.985440482291522e-05    8.136100871775491e-05    4.235312628999691e-06    XX
RKF012    274987    0.024993908802961595    0.0002976902928722274    0.008404033645226865    0.0001740825282357667    XY
RKF006    4539412    0.04969938837893542    0.00010200142187858991    0.0001235842880091078    5.217410304550885e-06    XX
RKF011    2451385    0.04748254558137543    0.0001358306272049424    0.00010728628917938227    6.61520110928253e-06    XX
RKF013    3183619    0.0249985943669767    8.749835168584174e-05    0.009403135236974022    5.409090798642958e-05    XY
RKF010    5288220    0.02387173756008638    6.63805279436928e-05    0.009066566822106494    4.121819000308491e-05    XY
RKF014    6728483    0.04847808934049473    8.27987087955023e-05    0.00010893986058967527    4.023566379492625e-06    XX
RKF017    3279147    0.04691951900905937    0.00011677802347790288    7.898395527861362e-05    4.907630357422016e-06    XX
RKF016    6199272    0.0242552673926874    6.178752442282515e-05    0.00949805073886095    3.8956018548193124e-05    XY
RKF019    1197356    0.026209414743818882    0.00014599897269467098    0.008609803600599989    8.443204046749041e-05    XY
RKF015    8198935    0.02473052902602594    5.4237579095754106e-05    0.009935070835419479    3.463686689623713e-05    XY
RKF022    16731    0.02886856733010579    0.0012944660711369698    0.005857390472775088    0.0005899503767200105    XY
RKF018    5641760    0.04765693684240379    8.969174426671944e-05    0.00012141601202461643    4.638785720733058e-06    XX
RKF024    105496    0.0500303329036172    0.0006712025054067502    0.00036020323045423525    5.842215517228912e-05    XX
RKF021    4443253    0.04825608625032155    0.00010166830445147521    0.0001595677761315865    5.992215481933238e-06    XX
RKF025    1454458    0.0470718301937904    0.0001756143629207662    0.00011688202753190535    8.963918387841804e-06    XX
RKF023    5410999    0.024264280958100345    6.614714253508927e-05    0.010001849935658832    4.277781833542423e-05    XY
RKF020    6535391    0.025224963586723426    6.133829295782536e-05    0.009850214011678873    3.863113732963852e-05    XY
RKF027    4859512    0.025109105605665753    7.097367593718143e-05    0.010446933766188868    4.6123009350880434e-05    XY
RKF028    5290733    0.048286314958626717    9.319814449455963e-05    7.333577407894142e-05    3.7229233296669688e-06    XX
RKF029    7370786    0.025535132888134318    5.8102558010913396e-05    0.01026471261002558    3.712581732641564e-05    XY
RKF026    11452379    0.024951846249587094    4.609104120492017e-05    0.00938704525932996    2.849499607702029e-05    XY
RKF033    923228    0.024902840901705754    0.0001621787350947439    0.009053018322667857    9.857514521950076e-05    XY
RKF030    7714275    0.050762644577747096    7.903363769638128e-05    0.00010824089107531168    3.7456277650260242e-06    XX
RKF035    131544    0.04983883719515903    0.0005999942192840273    0.00016724442011798333    3.5653648364736146e-05    XX
RKF031    7789723    0.02599899893744617    5.7016034353858934e-05    0.010057995643747538    3.575193815778671e-05    XY
RKF032    7705443    0.02478326035245475    5.6005539769425354e-05    0.009872631593018079    3.561748024437787e-05    XY
RKF034    6384928    0.024813122403259676    6.156113682127591e-05    0.008964235775250715    3.730124238048356e-05    XY
RKF036    5091271    0.023714510580953165    6.743453902412108e-05    0.007584157276247915    3.844920835689443e-05    XY
RKF038    2925850    0.024859784336175812    9.102405596753559e-05    0.009957448262897961    5.8046351990787e-05    XY
RKF041    1001272    0.024452895916394348    0.0001543523464250125    0.008953611006799351    9.413910545041134e-05    XY
RKF039    2645994    0.04918416292705123    0.0001329432887458847    0.00011640238035309226    6.632255144311053e-06    XX
RKF040    2131385    0.025308895389617548    0.00010758188366376324    0.008027643996743902    6.112415727464591e-05    XY
RKF037    9565684    0.048779679529451316    6.964693615287083e-05    6.75330692504582e-05    2.656963350623474e-06    XX
RKF045    1686933    0.04854253251314664    0.00016546532153529424    0.00013752769078558544    9.028514348836389e-06    XX
RKF042    6071071    0.024368517515278607    6.257844996292343e-05    0.009225555095633045    3.880172162717625e-05    XY
RKF043    6439734    0.05013002089837872    8.598982387212113e-05    0.0001184831547390001    4.289124083014713e-06    XX
RKF044    5924565    0.048822487389369514    8.8534492836754e-05    8.270649406327722e-05    3.736144039116085e-06    XX
RKF048    702140    0.05018372404363802    0.0002605489872414442    0.00020793573931124847    1.7207094966437197e-05    XX
RKF049    1696580    0.04868618043357814    0.0001652256935230321    0.00014676584658548374    9.300225060162922e-06    XX
RKF050    1980663    0.02531425083419037    0.00011161165637461148    0.010721157511398962    7.317705112693909e-05    XY
RKF047    6655666    0.0266394076866237    6.241707343781694e-05    0.010632444596829228    3.9755721217456655e-05    XY
RKF052    4385891    0.025632419957541123    7.546182436541438e-05    0.010095098122593562    4.773347944147445e-05    XY
RKF046    11984026    0.02532287563461561    4.538219801347646e-05    0.009694154535379012    2.830337785241331e-05    XY
RKF051    9817155    0.050598976994862564    6.995244390314089e-05    0.00015340493248807826    3.95269699831951e-06    XX
RKF056    133334    0.04609476952615237    0.0005742592308751365    0.00030749846250768744    4.8015807568293996e-05    XX
RKF053    6228301    0.02492894932341902    6.247198740448456e-05    0.010399625836965812    4.064938563162347e-05    XY
RKF058    4213    0.042250178020413004    0.003099164166764246    0.0018988844054118206    0.000670719302308447    Contamination
RKF059    131086    0.04510779183131684    0.0005732245774125979    0.0003890575652624994    5.446835726177557e-05    XX
RKF060    401331    0.02415462548370298    0.00024234792433646118    0.008382108533853603    0.00014391215062697758    XY
RKF055    4433756    0.045245611170303464    9.870704863691161e-05    0.00014795581894899042    5.7762768453339095e-06    XX
RKF054    7904829    0.02492527036321722    5.544886357940303e-05    0.009372498759935224    3.4271778812876506e-05    XY
RKF061    2705790    0.04637684373140562    0.00012784741306291186    0.00010828630455430761    6.3258109321311376e-06    XX
RKF062    1889943    0.02357266859370891    0.0001103570253981702    0.01010453754425398    7.27492523830489e-05    XY
RKF057    5136258    0.0455814330199145    9.203224404990529e-05    0.000144463148073948    5.303025920416241e-06    XX
RKF064    1660002    0.023274670753408732    0.00011702366423658649    0.009355410415168174    7.471986052743306e-05    XY
RKF068    146182    0.023333926201584327    0.0003948389708844749    0.010329589142302063    0.00026444774447575254    XY
RKF067    3788180    0.04595425771742631    0.00010758015685822782    0.00011667872170804978    5.549517048035128e-06    XX
RKF071    227552    0.045339087329489526    0.0004361346872790316    0.009628568415131487    0.00020471024774575223    XXY
RKF063    5962863    0.0457375928308264    8.55545564287008e-05    5.8025817463859226e-05    3.119396766052003e-06    XX
RKF069    3543571    0.04775944943674051    0.00011328761197522049    5.02318141784093e-05    3.764939088824002e-06    XX
RKF073    217545    0.02353995725022409    0.00032505400405875444    0.007570847410880508    0.0001858435317468196    XY
RKF075    5597    0.05360014293371449    0.0030105278798370255    0.004645345720921922    0.0009089087677676427    XXY
RKF066    5785828    0.04534856549486089    8.650106053726355e-05    0.0001028374849719003    4.215709067935117e-06    XX
RKF076    2490635    0.025311215814440895    9.952551747374301e-05    0.00979709993636161    6.241023568472309e-05    XY
RKF077    1678055    0.022688171722619343    0.0001149511266558107    0.00931495094022544    7.415748537815439e-05    XY
RKF079    541993    0.02432503740823221    0.00020925820702471143    0.008343281186288383    0.00012355271147717703    XY
RKF072    4394558    0.045828272149326506    9.975218410974864e-05    0.00013243652717747723    5.48930714228127e-06    XX
RKF074    4443172    0.02290053142214616    7.096522858867193e-05    0.00948218975092569    4.597681711175559e-05    XY
RKF082    11028    0.03073993471164309    0.0016437026354506343    0.006256800870511426    0.0007508702068863884    XY
RKF078    2491332    0.044426033944893736    0.00013053744963970306    0.00012563560376537531    7.100898080898195e-06    XX
RKF083    1252877    0.045140105533105004    0.00018547991708214357    0.00028175152069995695    1.4994007573256237e-05    XX
RKF085    29210    0.04611434440260185    0.0012271577652689903    0.000547757617254365    0.00013690189437539152    Consistent_with_XX
RKF086    38740    0.049664429530201344    0.00110377717725894    0.00023231801755291688    7.743034338492375e-05    XX
RKF080    2629957    0.025584448719123545    9.736117602181306e-05    0.008591775454883863    5.691063008774681e-05    XY
RKF087    272156    0.02550008083599112    0.000302170960911645    0.007315657196607828    0.00016335156616512794    XY
RKF081    2452800    0.047993721461187216    0.0001364837827806738    8.765492498369211e-05    5.977754259533325e-06    XX
RKF090    494332    0.02295825477614235    0.00021301816195299514    0.008662194638421142    0.00013180000929188216    XY
RKF084    4798190    0.04503093874982025    9.466979366298953e-05    0.00014359581425495865    5.470172048119509e-06    XX
RKF088    6353402    0.02157064829204889    5.7635911713887505e-05    0.008721154430335118    3.68877138128851e-05    XY
RKF092    2207328    0.02398963815074153    0.00010299250628520716    0.009002739964336972    6.357555259890094e-05    XY
RKF093    210748    0.04410480763755765    0.0004472665029666001    0.00017556512991819613    2.8860195809037355e-05    XX
RKF094    227952    0.025645749982452445    0.000331088762408067    0.009273882220818418    0.00020076402341880165    XY
RKF096    233939    0.04650357571845652    0.0004353628762246087    0.0003419694877724535    3.8226813165776654e-05    XX
RKF097    172894    0.04528786424051731    0.0005000773454182541    0.0002660589725496547    3.922303650347012e-05    XX
RKF089    7979048    0.046568462804083895    7.459593622081969e-05    9.913463360541258e-05    3.5246470655750363e-06    XX
RKF091    7762689    0.04888048458465875    7.738899452791976e-05    0.00011039988849224798    3.7709801768172513e-06    XX
RKF100    852980    0.023619545593097143    0.0001644280412910857    0.009261647400876925    0.00010371801226863528    XY
RKF099    2965362    0.022527772325941994    8.617325121064894e-05    0.009027228378862344    5.4924892655188785e-05    XY
RKF095    6569329    0.024162589512566657    5.991008883103838e-05    0.009843927743609735    3.85190466718649e-05    XY
RKF103    842111    0.044266135936948926    0.00022414013219244862    0.00013774906158451795    1.2788798373757113e-05    XX
RKF101    5018407    0.04438539958994956    9.193449930221523e-05    0.00010082880882319828    4.4821613085251595e-06    XX
RKF098    8050989    0.023808876151737383    5.372943312598137e-05    0.008258115866261897    3.189445583961688e-05    XY
RKF106    1529210    0.02214869115425612    0.00011900819811897324    0.010186959279628044    8.120173450446163e-05    XY
RKF105    3008192    0.04959490617620152    0.00012517573154886605    0.00013097568240325085    6.598027420517262e-06    XX
RKF107    1244629    0.02498816916526933    0.00013991111043871237    0.008829137036016356    8.385200164959132e-05    XY
RKF108    780096    0.04529570719501189    0.00023544470857397973    0.000166646156370498    1.46146168960583e-05    XX
RKF102    7803888    0.04754053364169245    7.617277257205878e-05    9.982203742544742e-05    3.5763171375710063e-06    XX
RKF104    6996010    0.024403767290212566    5.8336219892371115e-05    0.009069741181044625    3.584212757119301e-05    XY
RKF114    397193    0.023721465383327502    0.00024146647056960162    0.009748409463409475    0.00015589739654197976    XY
RKF113    3807755    0.05028238423953222    0.00011198779134758472    0.00010504877545955557    5.2521628846015144e-06    XX
RKF109    5715763    0.02414673246598923    6.420728986674242e-05    0.009860100917410327    4.132871042594385e-05    XY
RKF115    2907617    0.02420745235703327    9.013317957549273e-05    0.009463763624989123    5.678041029608106e-05    XY
RKF110    9126952    0.026703876606341305    5.3363802701819256e-05    0.010599376440239852    3.389716402524897e-05    XY
RKF119    13077    0.036093905329968645    0.0016310986892295216    0.008717595778848359    0.0008129110005211473    XXY
RKF118    4952355    0.026607139431644136    7.231648132402345e-05    0.009582713678643797    4.37771492992856e-05    XY
RKF116    6736942    0.04485581143492107    7.97466454187774e-05    0.00011384987431983235    4.110646682223111e-06    XX
RKF122    204663    0.023624201736513195    0.00033571241817354874    0.008961072592505729    0.00020830787407013856    XY
RKF123    14068    0.04911856696047768    0.0018220900970031672    0.001634916121694626    0.0003406247887749955    Contamination
RKF120    3402821    0.04987126857392734    0.00011800404136915709    7.552557128335578e-05    4.710977787824674e-06    XX
RKF126    554259    0.023599075522454303    0.00020389435827973608    0.008815373318250132    0.00012555709421071892    XY
RKF117    11617940    0.026096278686238695    4.677165513685647e-05    0.00914129355118033    2.7921910328260434e-05    XY
RKF128    61418    0.04874792406135009    0.0008689164850024798    0.00043961053762740565    8.458448916400051e-05    XX
RKF121    7031555    0.02665242609920565    6.0740261905860577e-05    0.009739950835910408    3.7036276903268634e-05    XY
RKF130    114101    0.04682693403212943    0.0006254448450209191    0.00031550994294528533    5.257669429277124e-05    XX
RKF124    6842004    0.02434506030689254    5.891988483937148e-05    0.009636065690695299    3.734699145912247e-05    XY
RKF131    406758    0.02219747368214024    0.00023099857497112757    0.010278839014844207    0.00015814679992311374    XY
RKF127    8516903    0.02704926896549133    5.5588165264164784e-05    0.010034163826921594    3.415150498241946e-05    XY
RKF133    5691089    0.047975879484576676    8.958550778198903e-05    0.00014672060127683822    5.0771032801806595e-06    XX
RKF129    8037560    0.025783571133528086    5.590326134723212e-05    0.009720611727937334    3.460696821576601e-05    XY
RKF132    10499313    0.04739510099375074    6.557566303110274e-05    0.00013581841021407783    3.596411562768078e-06    XX
RKF136    4650947    0.04749871370282224    9.862863316862246e-05    0.00015244207254995595    5.7246458178073925e-06    XX
RKF134    9624244    0.048193603570316795    6.903760193968307e-05    9.153965755647924e-05    3.0839082638022798e-06    XX
RKF137    2222636    0.022428323846099857    9.932041875974932e-05    0.010070474877577795    6.69719496052364e-05    XY
RKF135    7449461    0.04719254184967208    7.769209514752288e-05    0.00010067842492228632    3.6760712277637584e-06    XX
RKF140    2828747    0.05052519719861833    0.00013022629275981148    0.00011489185848009738    6.372687527854176e-06    XX
RKF138    7023575    0.046797535443132594    7.969387734592719e-05    0.00010592896067885657    3.883338424847553e-06    XX
RKF139    7127032    0.024404829387604826    5.779873779933493e-05    0.009923766302719    3.7129425341531164e-05    XY
RKF144    1725056    0.04861929119982192    0.00016374946247577584    0.00010086629071751874    7.646268111075187e-06    XX
RKF141    8513902    0.02317621227023755    5.1566187098476334e-05    0.009926940667158254    3.397637264193408e-05    XY
RKF146    129642    0.04582619829993367    0.0005807614728250292    0.00029311488560805914    4.754254405210988e-05    XX
RKF142    7603695    0.02421164973082166    5.5741372959123146e-05    0.009354136377116651    3.4909909252880006e-05    XY
RKF145    4404098    0.023389125310108904    7.201770559725203e-05    0.00908789949724098    4.52189877816156e-05    XY
RKF149    157092    0.044572607134672676    0.0005206619357093755    0.00034374761286379957    4.677008447542864e-05    XX
RKF143    8131174    0.049550532309356556    7.610480030611118e-05    0.00010281418156836884    3.5557200207515646e-06    XX
RKF148    4511371    0.023455840807594854    7.125530024535619e-05    0.009883691675989405    4.6574524502980976e-05    XY
RKF152    214936    0.022657907470130644    0.0003209804784408722    0.00919343432463617    0.00020586321252557361    XY
RKF147    8072371    0.02364918559863019    5.348235033114331e-05    0.009289216266199857    3.3764663458989865e-05    XY
RKF154    2200289    0.023681889060936996    0.00010250946813083602    0.009553290499566193    6.557709667194097e-05    XY
RKF151    6880470    0.04153597065316759    7.60660804676253e-05    0.00012935162859513958    4.3355960062230015e-06    XX
RKF153    5944846    0.047082632586277255    8.687357338120511e-05    0.00011169338953439668    4.334302073528315e-06    XX
RKF150    8161575    0.04858057421514842    7.525413032527384e-05    8.478755632338122e-05    3.223002624628822e-06    XX
RKF156    2182328    0.022808212147761475    0.00010105912037641556    0.009833993790117708    6.679730773452878e-05    XY
RKF158    2265629    0.046976799820270664    0.00014057207422775664    0.00015536524294136418    8.280351958556238e-06    XX
RKF155    5869497    0.023629282032174136    6.26948970476361e-05    0.009824010473129129    4.0709911796986214e-05    XY
RKF161    3468761    0.04500396539283046    0.00011131123116597705    0.00010781947790579979    5.574911910326732e-06    XX
RKF159    7202946    0.04652304765300198    7.847550133550318e-05    0.00011745194258016095    4.037843819194409e-06    XX
RKF160    7908307    0.0231718369051682    5.3499233225784155e-05    0.009974954184252078    3.533757843660608e-05    XY
RKF163    2427493    0.023163815508427832    9.654658679903226e-05    0.009106102468678592    6.0967845811428574e-05    XY
RKF157    12344051    0.024723893315087567    4.419705879169971e-05    0.009539250931481084    2.7666034722332173e-05    XY
RKF166    58115    0.04374085864234707    0.0008483739620889479    0.0004301815366084488    8.601779971562417e-05    XX
RKF165    1224039    0.022603854942530425    0.0001343472988337254    0.009585478894054845    8.806792817031667e-05    XY
RKF167    16975    0.04288659793814433    0.0015550258232811945    0.0    0.0    XX
RKF168    158343    0.02684678198594191    0.00040619754580067496    0.007079567773756971    0.00021069836290162847    XY
RKF164    3248833    0.023332378118542874    8.375084628962246e-05    0.009568051050946602    5.4008282743802115e-05    XY
RKF171    3033    0.03395977579953841    0.003288848036458723    0.007253544345532476    0.0015408419816826183    XY
RKF162    6336267    0.04718519595212765    8.423457613874453e-05    9.516644421707608e-05    3.875292791708371e-06    XX
RKF169    4404466    0.046337285836693935    0.00010016501642029698    0.00015779438415462852    5.985009900364968e-06    XX
RKF172    3308098    0.0222958932897393    8.117587430516534e-05    0.010096436078979523    5.496564271985301e-05    XY
RKF174    544584    0.04469466602030173    0.00028000546692966973    0.00014322859283416332    1.621628318742075e-05    XX
RKF173    4507257    0.023362324358251592    7.114896727743362e-05    0.01003071269288616    4.69375692740267e-05    XY
RKF176    3259406    0.023038246846204494    8.309870661347223e-05    0.009906099454931358    5.485551593902096e-05    XY
RKF175    3397579    0.0241313005525405    8.32532654266907e-05    0.009888511790307157    5.368126430650124e-05    XY
RKF178    224290    0.049971019662044674    0.00046006858260470087    0.00017834054126354272    2.8195600931297162e-05    XX
RKF170    8622625    0.023768168046273613    5.187457928441576e-05    0.00968742117394645    3.3355733021594184e-05    XY
RKF180    315421    0.02292491622307963    0.0002664848634340866    0.009948608367863902    0.0001767114679621543    XY
RKF177    4793985    0.04444277568661562    9.411971474527991e-05    0.00013078889483383865    5.222863760040844e-06    XX
RKF181    3922944    0.0234795602486296    7.645037042704838e-05    0.010680499135343252    5.18988823246479e-05    XY
RKF179    4641586    0.04389340195355639    9.508665676026912e-05    0.0001281889423141142    5.254897432256427e-06    XX
RKF184    1056764    0.02325306312478472    0.00014660274739051782    0.008548739359024343    8.955662482665471e-05    XY
RKF186    889233    0.022213525588906394    0.0001562870426579716    0.010328001772313893    0.00010721264427564682    XY
RKF187    299399    0.04577503598876416    0.0003819570773685249    0.0001970614464310168    2.5652687155714702e-05    XX
RKF182    6670798    0.023149404314146523    5.8223068213277476e-05    0.00969853981487672    3.794442633247508e-05    XY
RKF185    4045871    0.04584970702229508    0.00010398499151370511    0.00013989571096063123    5.879844003004055e-06    XX
RKF183    8090630    0.02393200529501411    5.373266872883822e-05    0.009769202151130382    3.457853526047421e-05    XY
RKF190    2194197    0.044481876513366846    0.0001391788379146809    7.838858589269788e-05    5.976839367749168e-06    XX
RKF189    6923171    0.04822948905927645    8.142727919883483e-05    0.0001011097371421275    3.821395646696605e-06    XX
RKF188    8883868    0.04665388994973811    7.075679961657782e-05    0.00011425203526211781    3.585965551342309e-06    XX
RKF191    5483275    0.022962007194605415    6.396473965560184e-05    0.009939315463842321    4.2363236397688765e-05    XY
RKF193    2019601    0.022565843451255965    0.0001045049237338883    0.009201322439432343    6.718696842276307e-05    XY
RKF192    10173122    0.02333049775673584    4.732696874876373e-05    0.009554785640042456    3.0499911323440916e-05    XY
RKF197    993387    0.04470060510153646    0.0002073324197166597    0.00011677221465551694    1.0841394902781526e-05    XX
RKF196    5687661    0.023541487440970902    6.357362797135799e-05    0.009861698860041061    4.143400812579534e-05    XY
RKF195    7367369    0.04510511147195152    7.646002811182337e-05    6.365908915380783e-05    2.9394100530513362e-06    XX
RKF194    8881698    0.02459552216254144    5.1972354853311994e-05    0.009651983213119834    3.280606915661234e-05    XY
RKF200    1973813    0.022083145667801358    0.0001045992165606907    0.009567269037137763    6.928727525851391e-05    XY
RKF199    4954431    0.024729378610782955    6.977057154330023e-05    0.008006973959269996    4.003977472194712e-05    XY
RKF201    2442157    0.02276225484274762    9.543792031198421e-05    0.009281139582754097    6.13605265043106e-05    XY
RKF204    222905    0.04304524348937888    0.00042988113015432245    0.00014804513133397635    2.5769441706255692e-05    XX
RKF203    548551    0.044772500642602055    0.00027922260750203346    0.00017136054806207626    1.7672976584064314e-05    XX
RKF205    430720    0.04362230683506686    0.00031122287763463483    0.00010215453194650818    1.5399588511804786e-05    XX
RKF206    1388340    0.0459880144633159    0.00017776707512885708    0.00011308469106991083    9.024630560635189e-06    XX
RKF198    7110809    0.023075011577444987    5.6304365184753336e-05    0.009450682756350227    3.628358050756795e-05    XY
RKF202    4947877    0.039725320576885804    8.780555586360133e-05    9.13523113044241e-05    4.296655012826915e-06    XX
RKF207    3095142    0.048389702314142614    0.0001219735748435695    0.00010629560776209945    5.859955086955526e-06    XX
RKF211    2016503    0.04906861036160125    0.00015211674888544874    9.86856949878081e-05    6.995298244520342e-06    XX
RKF212    602153    0.04451360368544207    0.00026576953975912277    8.469608222494947e-05    1.1859321462542445e-05    XX
RKF209    4753837    0.04696080240025058    9.70288742793368e-05    7.972507260976764e-05    4.095038655659181e-06    XX
RKF214    125804    0.024585863724523864    0.00043660633486709334    0.008680169152014245    0.0002615313564463172    XY
RKF210    5667786    0.02357710753370011    6.373199546802594e-05    0.010672597730401254    4.316168265437327e-05    XY
RKF208    8660388    0.04808421978322449    7.269957552862796e-05    9.191274109196955e-05    3.2576110147449963e-06    XX
RKF213    7824652    0.02322991488950563    5.385021836455314e-05    0.009891813718999899    3.5379099487408926e-05    XY
RKF218    3926270    0.022794917313378855    7.53219904909238e-05    0.009266046400273033    4.835436428523151e-05    XY
RKF219    1078461    0.02388218025501154    0.0001470232044936614    0.009374469730477042    9.279528105834359e-05    XY
RKF215    8406072    0.04655277756364685    7.266488244362338e-05    0.00010706546410737381    3.568657748238391e-06    XX
RKF221    407367    0.047237503283280184    0.00033238611399745747    0.0001767448025981486    2.0827733901890017e-05    XX
RKF220    1611655    0.02317493508226016    0.000118517264958257    0.009523129950268513    7.650256287469906e-05    XY
RKF217    8444293    0.024445030507586604    5.3142198536066324e-05    0.009837768537875225    3.396407814709139e-05    XY
RKF225    12993    0.026706688216732086    0.0014144160260058595    0.0072346648195182025    0.0007434945519177843    XY
RKF224    6218017    0.023076488854887337    6.021285136053604e-05    0.009521685128876295    3.894515540810279e-05    XY
RKF227    189365    0.023314762495709344    0.0003467711458280489    0.010529928973147097    0.00023456553227458097    XY
RKF223    6812028    0.025435303554242585    6.032336891319472e-05    0.010798693135142721    3.9599502387076254e-05    XY
RKF229    256902    0.04476025877571992    0.000407961089405898    0.0002530147682773976    3.137864924616287e-05    XX
RKF226    6100138    0.025934331321684854    6.435196546142903e-05    0.009633880413852932    3.9548378590581385e-05    XY
RKF230    264403    0.02265481102710635    0.00028938167256662155    0.00899762861994758    0.00018364038280262448    XY
RKF232    8584    0.04182199440820131    0.0021606310559886695    0.005824790307548928    0.0008213471565727895    XXY
RKF233    11464    0.034193998604326585    0.0016972734041262527    0.0078506629448709    0.0008242777948783589    NA
RKF222    8669435    0.04667951256339081    7.164522023178522e-05    0.0001253830266908974    3.8027410159429457e-06    XX
RKF235    470204    0.04527609292987724    0.00030320070763679714    0.00017439239138756794    1.925673858277467e-05    XX
RKF236    17858    0.030238548549669616    0.0012814348166576908    0.009071564564900885    0.0007094892738782824    XY
RKF231    2718497    0.022949078111912574    9.081901607230161e-05    0.008805601036160791    5.6662338323600317e-05    XY
RKF228    4640925    0.04294079305310902    9.410271599680773e-05    0.00013337858293335919    5.360580346298973e-06    XX
RKF239    264078    0.0415180363377487    0.000388189928647044    0.00027264671801513187    3.21273432596554e-05    XX
RKF240    487707    0.0453181930954446    0.0002978421248098315    0.00021529319858029514    2.1008202993150395e-05    XX
RKF234    6311373    0.0451169658329495    8.261960367447242e-05    0.0001009289103971513    3.998747218844972e-06    XX
RKF242    1973585    0.02228026662140217    0.00010506050022774006    0.010196672552740317    7.151148116613852e-05    XY
RKF237    8764818    0.02310156354644215    5.074274336456922e-05    0.00932478004677336    3.24648572046555e-05    XY
RKF244    215974    0.02342874605276561    0.0003254810847999498    0.009223332438163853    0.00020569847905155259    XY
RKF238    7821955    0.04483444356302229    7.399247631467411e-05    0.00013078571789277744    4.088783375201595e-06    XX
RKF241    7904548    0.024301958821680885    5.4769633697589036e-05    0.010449553851782544    3.6168402173687375e-05    XY
RKF245    4032329    0.02266159333725001    7.411220320547695e-05    0.00969365346924817    4.879221642725333e-05    XY
RKF246    5201014    0.04899217729465831    9.464799177117761e-05    9.978823360213988e-05    4.379998747367689e-06    XX
RKF247    3709942    0.023158043980202384    7.808714228212609e-05    0.010371051622909468    5.2597370536751094e-05    XY
RKF243    7402021    0.02411895345879186    5.6390054578524494e-05    0.010064548587473611    3.668811786963574e-05    XY
RKF249    1637859    0.04683248069583523    0.00016508968655680201    0.0001428694411423694    9.339000341692e-06    XX
RKF252    13783    0.0541971994485961    0.001928487563759693    0.0030472320975114273    0.0004694811727616898    Contamination
RKF251    2366446    0.04465303666341847    0.00013426343801736473    0.00012001118977572275    7.120926606291288e-06    XX
RKF253    4032181    0.02284743666020945    7.440976267625194e-05    0.009971278571076051    4.947995685726022e-05    XY
RKF248    9333292    0.02467435927216249    5.0778554784916636e-05    0.010690547343852523    3.3662674930747464e-05    XY
RKF250    9759439    0.04729585378831713    6.794822803020506e-05    0.00011926915061408755    3.4956322364941447e-06    XX
RKF257    154509    0.053938605518125154    0.000574688658917703    0.00020710767657547457    3.660801914573728e-05    XX
RKF255    6266848    0.02425924483887275    6.145840440530469e-05    0.011288449951235454    4.220145057961117e-05    XY
RKF254    11043541    0.047006299881532564    6.368965177178688e-05    9.996793600893047e-05    3.0085309248254866e-06    XX
RKF258    5229795    0.02339862269936011    6.610152525773924e-05    0.01048587946563871    4.45421417703693e-05    XY
RKF261    52650    0.026799620132953467    0.0007038275561172012    0.009230769230769232    0.00041677917865946156    XY
RKF256    9600291    0.04812812444956096    6.907907565653527e-05    9.864284322214816e-05    3.2053035979130086e-06    XX
RKF260    9312418    0.05005670922417787    7.145765445741932e-05    6.432271403624708e-05    2.6280703202977166e-06    XX
RKF263    6950551    0.022922355364344497    5.676550970372736e-05    0.010246669652521074    3.819840563064897e-05    XY
RKF262    9151517    0.024141134196658323    5.073711814359681e-05    0.01021622972453638    3.324060684756964e-05    XY
RKF264    1604803    0.04471016068638954    0.00016313976442169884    0.00015017419583587517    9.672843948614262e-06    XX
RKF259    13499920    0.04869643671962501    5.8579081268883736e-05    0.00015837130886701552    3.4248240371031996e-06    XX
RKF267    394703    0.04466396252372037    0.0003287921892016024    0.00029642541353878737    2.740047717404683e-05    XX
RKF269    788809    0.044904406516659924    0.00023317499309473237    0.0002256566545260006    1.6911772889959743e-05    XX
RKF268    2216905    0.023532357047324988    0.00010180945239118286    0.009559724029671998    6.535266201363675e-05    XY
RKF265    3750232    0.02337668709562502    7.802359515594961e-05    0.010419088739043344    5.2433814764004756e-05    XY
RKF266    5097177    0.0447088653189795    9.153766717010947e-05    0.00010554862034416306    4.550283987820991e-06    XX
RKF271    3105287    0.04343559870633536    0.00011567223864426239    5.603346808201625e-05    4.247767239225155e-06    XX
RKF270    7327253    0.04694692540301256    7.814326036027078e-05    0.00010658837629873023    3.8138287030335335e-06    XX
RKF272    6152464    0.04543025363496642    8.395602595010678e-05    0.00010386082714177604    4.108457451374711e-06    XX
RKF273    5396009    0.023711969346233486    6.549927036947693e-05    0.010502947641488366    4.388605266700622e-05    XY
RKF277    101840    0.04363707776904949    0.0006401474202760258    0.0002258444619010212    4.708650762703786e-05    XX
RKF274    4958552    0.023675258422216808    6.827584371915215e-05    0.009829280806170834    4.430354466198327e-05    XY
RKF279    347915    0.04252475460960292    0.00034209608863212124    0.00019545003808401476    2.3699482203134455e-05    XX
RKF276    7375315    0.04409804869351343    7.56007447018017e-05    0.00013518066685965277    4.280925296078686e-06    XX
RKO001    964661    0.0239244667297631    0.00015558778067638785    0.009361837992828569    9.805070649825546e-05    XY
RKF278    7401206    0.04607357233402232    7.7060555901518e-05    7.052904621219839e-05    3.086863627841858e-06    XX
RKF275    9327449    0.02321567236658169    4.9306994717204024e-05    0.010729728996642061    3.3734199891296975e-05    XY
RKF280    7067312    0.023522380220372327    5.700916074245268e-05    0.010521397668590265    3.8380690962167096e-05    XY
RKO004    263833    0.0223929531180709    0.00028805358805385255    0.010434630997638658    0.0001978318599182753    XY
RKO003    2019530    0.021832307517095563    0.00010283271985898071    0.009875069942016212    6.958088263214342e-05    XY
RKO006    1473354    0.04569709655656414    0.00017204175849888585    0.00016900215426842428    1.0709171303849226e-05    XX
RKO010    1225950    0.044727762143643705    0.00018668773391441318    9.869896814715119e-05    8.972190662164025e-06    XX
RKO005    4108266    0.022612946678720415    7.334704009392967e-05    0.010047548040949636    4.9204852680163366e-05    XY
RKO002    7709841    0.024959788405493705    5.618352739402839e-05    0.010239770184625078    3.625662657536705e-05    XY
RKO012    4139653    0.022777754560587567    7.332805362740152e-05    0.009674723944253298    4.8108991555920956e-05    XY
RKO007    7027506    0.02292676804544884    5.645915367476723e-05    0.009470927523932388    3.653669480192785e-05    XY
RKO013    5028612    0.0457537785774683    9.317934297033892e-05    0.00012329445978333584    4.951319398874858e-06    XX
RKO015    5836571    0.02285931242847898    6.18630380279206e-05    0.009702272104631298    4.0573337172642656e-05    XY
RKO018    4924932    0.02356763504551941    6.835636593244303e-05    0.009989579551555229    4.481190107329543e-05    XY
RKO014    7466807    0.04398011090952264    7.504023075617998e-05    0.0001249530086956848    4.090522266226719e-06    XX
RKO020    738394    0.02390593639709965    0.00017776842967180865    0.008880082990923546    0.00010917608949652483    XY
RKO016    7475537    0.022822574485284467    5.461951401528653e-05    0.00984678425108457    3.6114134790292385e-05    XY
RKO019    4506263    0.02375338501103908    7.173552104413357e-05    0.00943198388553886    4.553395858143971e-05    XY
RKO021    5632798    0.023510163155149536    6.384098759424702e-05    0.009303724365759256    4.0451682914888284e-05    XY
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