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Population genetics studies: Genetic Lineages of North Lebanon
#1
Population genetics studies From Ancient Anatolians to Greek Orthodoxy: Genetic Lineages of North Lebanon

I finally managed to get Illumina idat files converted to plink and here are some G25 results.

Scaled:

Code:
Zgharta_District:9236442092_R01C01,0.083091,0.145221,-0.05506,-0.086564,-0.01508,-0.037929,0.001175,-0.007154,0.001841,0.016037,0.007795,-0.009591,0.013528,0.00234,-0.009365,0.014452,0.014212,-0.004687,0.002891,-0.005127,0.007237,0.00272,-0.005546,0.001807,-0.001197
Zgharta_District:9236442092_R01C02,0.093335,0.149283,-0.048649,-0.082365,-0.007078,-0.027331,-0.002115,-0.00923,0.005318,0.013121,0.001624,-0.002548,0.015609,-0.000826,-0.01045,0.016309,0.014342,0.004181,-0.000126,0.004002,-0.003619,0.002968,-0.005916,0.00735,-0.001437
Dinniyeh_District:9236442092_R02C01,0.085367,0.14319,-0.053928,-0.092378,-0.014464,-0.028168,0.00141,-0.007154,-0.002045,0.005285,0.012504,-0.008093,0.008771,0.007156,-0.014115,0.000398,-0.017211,0.004181,0.010182,-0.005753,0.000499,0.006677,0.002588,-0.003133,-0.000359
Zgharta_District:9236442092_R02C02,0.092197,0.141159,-0.050534,-0.087856,-0.00677,-0.024542,-0.000705,-0.004615,0,0.008018,0.009419,-0.005095,0.015758,-0.00523,-0.002307,0.009149,-0.000261,0.006081,0.005782,0.003001,-0.001248,0.003586,-0.002465,-0.00253,0.005748
Zgharta_District:9236442092_R03C01,0.087644,0.147252,-0.062225,-0.082365,-0.004308,-0.030678,-0.00329,-0.006231,0.004909,0.001093,0.00682,-0.006145,0.012339,0.010872,-0.015065,0.005967,0.001695,0.002534,0.000754,-0.002626,0.003244,0.011129,0.003204,0.00241,-0.002155
Zgharta_District:9236442092_R03C02,0.085367,0.144205,-0.057322,-0.079135,-0.007694,-0.023148,-0.005405,-0.008077,0.003068,0.004738,0.00747,-0.002248,0.012785,-0.002615,-0.014794,0.0118,0.007953,0.001647,0.003142,-0.006253,-0.001996,-0.001484,0.00456,0.004338,-0.00012
Zgharta_District:9236442092_R04C01,0.087644,0.140143,-0.053551,-0.086564,-0.008617,-0.032072,-0.00282,-0.005769,0.005931,0.006196,0.005359,-0.002698,0.014271,0.009358,-0.007465,0.011535,0.008345,-0.00038,0.003394,-0.006753,-0.005366,0.006183,-0.004683,0.012773,0.004431
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Zgharta_District:9236442092_R05C01,0.084229,0.146236,-0.053174,-0.073644,-0.012618,-0.028726,-0.000235,-0.007384,0.007976,0.01221,0.003735,-0.002398,0.008325,0.003303,-0.002443,0.016574,0.014212,-0.003294,0.008045,0.001626,-0.006863,-0.002226,0.000246,0.003856,0.006227
Zgharta_District:9236442092_R05C02,0.092197,0.141159,-0.056191,-0.078489,-0.012618,-0.027889,-0.00564,-0.007154,0.002045,0.002005,0.010068,0.002098,0.012636,0.001651,-0.013708,0.008088,0.011865,0.003674,-0.001006,-0.001251,-0.004617,0.002844,-0.002835,0.003735,-0.002754
Zgharta_District:9236442092_R06C01,0.091058,0.146236,-0.052043,-0.08721,-0.007386,-0.028447,0.00141,-0.006,-0.001432,0.011663,0.010555,-0.007343,0.012636,-0.002752,-0.004207,0.012331,0.000652,0.003674,0.010056,-0.013006,0.00836,0.001237,-0.000246,0.003374,0.000599
Tripoli_District:9236442092_R06C02,0.060326,0.135065,-0.046763,-0.07429,-0.025235,-0.024263,-0.002115,-0.006231,0.001227,0.000547,0.007795,-0.01109,0.00996,0.002615,0.000679,0.016839,0.008475,-0.000127,-0.002263,0.009379,0.003494,-0.005317,-0.002835,0.005061,-0.00479
Tripoli_District:9236442156_R01C01,0.0774,0.138112,-0.04714,-0.06783,-0.010156,-0.018965,-0.000235,-0.000462,0.006136,0.011481,0.001461,-0.007194,0.007582,0.007432,-0.00475,0.001193,0.002347,0.006461,-0.001006,-0.003252,-0.003619,0.000618,-0.005916,-0.00012,-0.000359
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Zgharta_District:9236442156_R03C01,0.08992,0.144205,-0.049026,-0.084626,-0.008001,-0.023985,-0.00423,-0.013384,0.00409,0.012028,0.015427,0.00015,0.015907,-0.003028,-0.015472,0.023734,0.01682,0.000887,-0.00088,5e-04,-0.000624,-0.004946,-0.000616,0.001566,-0.003832
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Dinniyeh_District:9236442156_R04C01,0.094473,0.156392,-0.045632,-0.078166,-0.013541,-0.025379,-0.00611,-0.004615,-0.001227,0.010205,0.011042,-0.005845,0.011001,0.007294,-0.010315,-0.001193,-0.001434,0.004941,-0.001383,0.003252,0.005989,0.006801,-0.004314,0.003494,-0.006586
Zgharta_District:9236442156_R04C02,0.088782,0.145221,-0.056191,-0.084949,-0.016618,-0.023427,0.000705,-0.005077,0.000409,0.010752,0.003248,-0.002997,0.006838,0.003716,-0.006922,-0.005967,-0.011735,-0.003801,0.003142,0.006628,-0.000998,0.007666,0.000493,0.000361,0.005868
Zgharta_District:9236442156_R05C01,0.099026,0.14319,-0.053174,-0.075259,-0.011387,-0.023427,-0.00235,-0.005769,0.002863,0.010023,0.006008,-0.000599,0.005054,0.002615,-0.008686,-0.008221,-0.009518,0.001394,0.006536,-0.012881,0.00025,0.003091,-0.001602,-0.004338,0.011376
Zgharta_District:9236442156_R05C02,0.094473,0.150298,-0.047517,-0.083011,-0.01508,-0.033467,-0.00846,-0.005307,0.004704,0.014032,0.008931,-0.006594,0.005203,0.006193,-0.007736,-0.010872,-0.015646,0.006081,0.002388,-0.003752,0.003244,-0.002968,-0.005053,-0.001084,0.002036
Tripoli_District:9236442156_R06C01,0.060326,0.126941,-0.049026,-0.072029,-0.023389,-0.018407,-0.002585,-0.002077,0.005727,-0.004009,0.008444,-0.002847,0.007433,0.003578,0.002443,0.017104,0.016168,-0.002787,0.000251,0.006003,0.004367,-0.000989,-0.001849,0.004699,-0.003233
Zgharta_District:9236442156_R06C02,0.091058,0.145221,-0.053551,-0.082688,-0.010463,-0.024821,-0.00376,-0.005307,-0.001432,0.012939,0.006171,-0.003297,0.010406,0.001376,-0.0095,-0.007823,-0.012256,0.003674,0.005154,-0.008129,-0.003119,0.001855,-0.006902,0.003856,-0.002395
Koura_District:9236445147_R01C02,0.08992,0.145221,-0.057699,-0.074936,-0.016311,-0.026495,-0.00094,-0.004615,0.001841,0.001093,0.019324,-0.002248,0.007284,0.004266,-0.004343,-0.000663,-0.002608,0.002787,0.003268,-0.006628,0.002246,-0.001731,0.001109,0.004097,0.001197
Berkacha_9236445147_R02C02,0.085367,0.145221,-0.059208,-0.083334,-0.015387,-0.034304,-0.00423,-0.00923,0.005522,0.010387,0.002436,-0.010341,0.015312,-0.004404,-0.007872,0.024264,0.008866,0.000507,0.001885,0.001501,0.001497,0.002473,-0.003328,0.00735,0.002275
Tripoli_District:9236445147_R03C02,0.076261,0.125926,-0.048271,-0.067507,-0.020004,-0.016733,0.00282,-0.000231,-0.001841,0.008201,0.002598,0.000599,0.001487,0.001789,-0.002579,0.007292,0.005737,0.007221,-0.002011,0.004252,0.00861,0.001484,-0.004314,0.003012,0.00012
Zgharta_District:9236445147_R04C01,0.08992,0.152329,-0.058077,-0.082688,-0.010156,-0.031236,0.001645,-0.004615,0.002863,0.00893,0.003248,-0.011989,0.00996,-0.000688,-0.0076,0.008618,0.002868,-0.002407,0.00729,-0.004752,-0.003119,-0.000618,-0.004683,0.008555,0.000838
Koura_District:9236445147_R04C02,0.09675,0.145221,-0.051288,-0.084949,-0.017542,-0.032072,-0.004935,-0.015922,0.000409,0.013485,0.007957,-0.005995,0.010258,-0.00523,-0.010586,0.020817,0.022556,0.004941,0.00905,-0.003627,-0.002121,0.004575,-0.001972,0.00735,0.007065
Tripoli_District:9236445147_R05C01,0.095611,0.147252,-0.060339,-0.081396,-0.017849,-0.023706,-0.00188,0.001154,0,0.007654,-0.00065,-0.001948,0.003419,0,-0.005157,0.011535,0.014342,-0.003167,0.000251,0.005002,-0.00262,-0.000866,-0.000246,0.002048,-0.002874
Koura_District:9236445147_R05C02,0.091058,0.147252,-0.054305,-0.07752,-0.020311,-0.026495,-0.00752,-0.006692,0.005931,0.005467,0.007145,-0.005245,0.01115,0.002477,-0.009093,-0.001989,-0.001043,-0.002027,-0.000754,0.004877,0.00574,0.000618,0.004067,-0.003615,0.002275
Koura_District:9236445147_R06C01,0.088782,0.147252,-0.046386,-0.085595,-0.012925,-0.025658,0.00235,-0.007615,0.000409,0.00164,0.005521,-0.001349,0.008771,0.004404,-0.007329,-0.006099,-0.015516,-0.00038,0.00352,-0.008129,0.004866,0.005193,-0.002958,0.010242,-0.010059
Koura_District:9236445147_R06C02,0.088782,0.141159,-0.053174,-0.080427,-0.011079,-0.037092,-0.00047,-0.000692,0.000818,0.012939,0.010555,-0.003597,0.010109,-0.007019,-0.015065,0.009546,0.012126,-0.001014,0.000126,5e-04,0.000499,0.002226,-0.003204,0.003012,-0.007544
Koura_District:9236445178_R01C01,0.095611,0.149283,-0.059208,-0.076874,-0.011387,-0.026216,0.001175,-0.001154,-0.000614,0.009112,0.008607,-0.005395,0.012339,0.008395,-0.012079,-0.009149,-0.016559,0.00266,-0.001257,-0.003502,0.000624,-0.00507,-0.004314,0.00012,0.001796
Koura_District:9236445178_R01C02,0.091058,0.145221,-0.055437,-0.080427,-0.016311,-0.033188,-0.00329,-0.011999,0.003477,0.007289,0.01153,-0.005695,0.00892,0.007982,-0.011401,0.013524,-0.002347,-0.00228,0.002765,-0.00025,-0.002121,-0.002597,0.007888,0.002771,-0.002874
Koura_District:9236445178_R02C01,0.088782,0.14319,-0.04978,-0.084303,-0.015387,-0.032351,-0.000235,-0.006461,0.005522,0.008201,-0.000325,-0.007194,0.005649,-0.001101,-0.012486,0.016706,0.00678,0,0.011816,0.004002,-0.007612,0.004946,-0.002095,0.005543,-0.000599
Koura_District:9236445178_R02C02,0.083091,0.147252,-0.054682,-0.075259,-0.012002,-0.037092,-0.007285,-0.012923,0.007363,0.011481,0.007307,-0.003597,0.00223,-0.00234,-0.016422,0.016043,0.01708,0.003421,0.001257,0.007629,0.005241,0.004204,-0.00493,0.013014,-0.001197
Koura_District:9236445178_R03C01,0.091058,0.141159,-0.054305,-0.085595,-0.017849,-0.029284,-0.00705,-0.003692,-0.005522,0.003098,0.002436,-0.000899,0.007284,0.00523,-0.008822,0.001856,-0.014603,0.010262,0.012067,-0.008254,0.004492,0.006677,-0.009244,0.000241,-0.004311
Koura_District:9236445178_R03C02,0.099026,0.148267,-0.047894,-0.086887,-0.016003,-0.033467,-0.004465,-0.005307,0.00225,0.006196,0.008607,-0.004796,0.008325,0.007156,-0.001221,-0.005701,-0.01695,-0.000633,0.002263,-0.003001,0.000374,0.000989,0.007518,-0.001084,-0.001557
Koura_District:9236445178_R04C01,0.08992,0.144205,-0.052043,-0.085918,-0.013233,-0.030678,-0.00611,-0.002077,0.003681,0.011481,0.002436,-0.006744,0.009663,0.009358,-0.011401,-0.001989,-0.012778,0.005068,0.002263,-0.008254,-0.000624,0.003215,-0.003328,0.00241,0
Koura_District:9236445178_R04C02,0.084229,0.146236,-0.050157,-0.086887,-0.007694,-0.029284,0,-0.001615,0.000409,0.008383,0.001137,-0.006444,0.016799,0.002202,-0.007465,0.002784,-0.00326,-0.003674,0.00088,-0.007504,-0.005366,0.008161,0.001479,-0.006386,0.000838
Koura_District:9236445178_R05C01,0.097888,0.148267,-0.053174,-0.082365,-0.018157,-0.027331,-0.0047,-0.004384,-0.00634,0.00492,0.005359,-0.007793,0.012933,-0.00055,-0.011943,0.004773,-0.007693,0.002154,0.005908,0.00025,-0.003494,-0.000247,-0.002095,0.010001,0.002994
Koura_District:9236445178_R05C02,0.091058,0.152329,-0.050911,-0.081396,-0.007386,-0.027889,0.001175,-0.003461,0.009613,0.009294,0.008119,-0.002847,0.012785,0.013487,-0.006515,-0.007292,-0.009257,0.000507,0.004399,-0.006128,-0.00262,0.003091,-0.000493,0.005302,0.002036
Tripoli_District:9236445178_R06C01,0.088782,0.144205,-0.047517,-0.075582,-0.013233,-0.020638,-0.001175,-0.004384,0.001023,0.016766,0.007307,-0.007194,0.008325,-0.003853,-0.010586,0.002652,0.006519,0.00266,0.007165,0.001751,-0.002246,0.006554,-0.004437,0.004579,0.001317
Koura_District:9236445178_R06C02,0.020488,0.141159,-0.049026,-0.099484,0.002154,-0.039602,-0.017861,-0.000923,0.051745,0.001458,0.011042,-0.013338,0.026164,-0.007019,0.004479,0.005701,-0.001434,0.001014,0.002011,0.003877,0.004243,0,0.007641,0.010001,0.000958
Zgharta_District:9236445201_R01C01,0.093335,0.146236,-0.056191,-0.079135,-0.012925,-0.03012,-0.00517,-0.014769,0.004909,0.005285,0.003085,-0.007643,0.008176,-0.001239,-0.005022,0.000133,0.00339,0.005068,0.001885,-0.001626,0.006613,0.003339,-0.0053,-0.003133,0.001557
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Dinniyeh_District:9236445201_R04C01,0.073985,0.133034,-0.052797,-0.06783,-0.017542,-0.019243,0.00094,-0.006692,0.007363,0.008565,0.009743,-0.007044,0.015015,0.00234,-0.008822,-0.006895,-0.017211,0.005954,0.006536,-0.005628,-0.003743,0.001731,-0.007272,-0.001205,-0.002275
Zgharta_District:9236445201_R04C02,0.088782,0.139128,-0.056945,-0.08075,-0.011079,-0.025937,-0.00094,-0.007154,0.011249,0.006925,0.010393,3e-04,0.006095,-0.001101,-0.006243,-0.005967,-0.015646,-0.00076,0.003017,-0.006003,0.005116,0.005688,0.001602,0.00735,-0.012933
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Koura_District:9238388096_R01C01,0.097888,0.144205,-0.05242,-0.077197,-0.008925,-0.029841,-0.00705,-0.008307,-0.005318,0.006925,0.012342,-0.003747,0.010109,0.004542,-0.008279,0.010342,0.013299,0.001267,-0.000251,-0.005127,-0.002121,0.003586,-0.000123,0.003133,0.002155
Zgharta_District:9238388096_R01C02,0.093335,0.152329,-0.042238,-0.079781,-0.011387,-0.021753,-0.00235,0.002769,0.011658,0.005467,0.002598,-0.003447,0.008622,0.002752,-0.004207,0.002652,-0.02021,0.003927,-0.000126,-0.004502,-0.000624,0.003957,-0.0053,-0.008314,0.00455
Koura_District:9238388096_R02C01,0.087644,0.147252,-0.050911,-0.069445,-0.018157,-0.028168,-0.00141,-0.003231,-0.004295,0.011299,0.007145,-0.01079,0.012339,0.004679,-0.012622,0.00411,-0.007041,0.00038,-0.004148,-0.002251,-0.002246,0.002968,-0.004683,-0.00241,0
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Koura_District:9238388096_R03C01,0.092197,0.15436,-0.055437,-0.082042,-0.019388,-0.032072,-0.00423,-0.00923,0.002659,0.014761,0.006333,-0.004046,0.011001,0.00812,-0.0095,-0.001326,-0.011735,0.001774,0.005154,-0.002251,0.003369,-0.000371,0,-0.001807,0.001676
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Koura_District:9238388096_R04C02,0.085367,0.14319,-0.053551,-0.079781,-0.013849,-0.021196,-0.002585,-0.000923,-0.004909,0.002916,0.004222,-0.008243,0.012339,0.005505,-0.00855,-0.006364,-0.01682,0.00076,0.006913,0.002626,0.001497,0.005441,-0.003204,0.007832,0.005868
Koura_District:9238388096_R05C01,0.076261,0.139128,-0.048649,-0.066861,-0.014464,-0.024263,-0.00188,-0.005538,-0.001023,0.006014,0.005359,-0.004646,0.010258,-0.001376,-0.005836,0.02201,0.013169,0.003167,0.006034,0.008754,0.005116,-0.000742,0.002958,0.000602,0.000958
Koura_District:9238388096_R05C02,0.081953,0.148267,-0.049403,-0.082688,-0.016003,-0.031794,-0.00705,-0.011307,0.006545,0.016037,0.006983,-0.000749,0.012785,0.008808,-0.009908,-0.000133,-0.008605,-0.001014,-0.00352,-0.004502,0.00262,0.003957,0.004437,0.002289,0.000718
Koura_District:9238388096_R06C01,0.088782,0.148267,-0.053551,-0.08398,-0.014156,-0.032351,-0.00235,-0.003923,0.00225,0.01221,0.001461,-0.003447,0.010406,0.004679,-0.012351,0.005967,-0.000913,-0.00038,0.004525,0.003126,-0.002995,-0.006801,0.005916,-0.003976,0.002754
Zgharta_District:9238388096_R06C02,0.091058,0.152329,-0.056945,-0.080427,-0.004616,-0.041834,-0.00235,-0.009692,0,0.003462,0.01153,-0.006594,0.016799,0.011836,-0.008415,-0.003315,-0.012126,-0.00038,0.002263,-0.00075,0.003369,0.011129,-0.00493,-0.002651,0.002395
Koura_District:9238388100_R01C01,0.085367,0.145221,-0.05242,-0.078166,-0.018157,-0.026774,0.00094,-0.006461,0.000614,0.010205,0.011692,-0.006894,0.008325,0.002615,-0.011808,-0.00305,-0.018645,0.0019,-0.00176,-0.005878,-0.001248,0.001731,0.003944,0.007953,-0.001676
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Zgharta_District:9238388031_R03C01,0.0077,0.0143,-0.0131,-0.0245,-0.0023,-0.0095,-0.0012,-0.0027,0.0001,0.0051,0.0036,-0.003,0.0081,-0.0037,-0.0131,0.012,0.0107,0.0026,0.0033,0.0028,-0.0095,0.0023,-0.0012,0.0023,0.004
Tripoli_District:9238388031_R03C02,0.0059,0.0127,-0.0129,-0.02,-0.0077,-0.0099,-0.0013,-0.0031,0.0009,0.0011,0.0003,-0.0049,0.0036,0.004,-0.0026,-0.0056,-0.0079,0.0023,0.0058,-0.0027,-0.0038,-0.0026,0,-0.0025,0.0028
Zgharta_District:9238388031_R04C01,0.008,0.0149,-0.0115,-0.0271,-0.0022,-0.0093,-0.0019,-0.0026,0.0038,0.006,0.0072,-0.0041,0.0099,0.0051,-0.0033,-0.002,-0.0134,0.0044,0.0069,-0.0068,0.0058,0.0011,-0.0002,-0.0001,-0.0008
Zgharta_District:9238388031_R04C02,0.0077,0.0148,-0.0159,-0.0229,-0.0064,-0.0103,-0.0008,-0.0024,0.0014,0.0027,0.0002,-0.0032,0.0083,0.0106,-0.0055,-0.0039,-0.0063,0.0005,-0.002,-0.0043,-0.0002,0.0014,-0.0051,0.005,0.0014
Zgharta_District:9238388031_R05C01,0.0081,0.0144,-0.0133,-0.0231,-0.0028,-0.0078,-0.0002,0.0008,-0.0019,0.0025,0.0046,-0.0005,0.0004,0.001,-0.0055,-0.0026,-0.0107,-0.0002,0.005,-0.0061,-0.0028,0.0054,-0.0036,0.0001,0.005
Zgharta_District:9238388031_R05C02,0.0083,0.0144,-0.0154,-0.0249,-0.0046,-0.0102,-0.0006,-0.0037,-0.0009,0.0039,0.0037,-0.0033,0.0075,0.0029,-0.0027,0.0061,0.0027,0.0019,0.002,-0.0059,-0.0024,0.0061,0.0043,-0.0064,-0.0044
Zgharta_District:9238388031_R06C01,0.0083,0.0145,-0.0151,-0.0237,-0.0069,-0.0085,0.0006,-0.0005,-0.0036,-0.0053,0.0066,-0.0035,0.0095,0,-0.011,0.0097,0.0029,0.0046,0.0052,-0.0007,-0.0004,0.0015,-0.0002,0.0003,0.0049
Zgharta_District:9238388031_R06C02,0.008,0.0146,-0.015,-0.0254,-0.0032,-0.0111,0.0013,-0.0022,0.0007,0.0066,0.0043,-0.0021,0.0064,0.0006,-0.0059,-0.002,-0.0054,0.0009,0.0065,-0.0062,0.0028,0.0004,-0.006,0.0054,0.0078
Koura_District:9238388096_R01C01,0.0086,0.0142,-0.0139,-0.0239,-0.0029,-0.0107,-0.003,-0.0036,-0.0026,0.0038,0.0076,-0.0025,0.0068,0.0033,-0.0061,0.0078,0.0102,0.001,-0.0002,-0.0041,-0.0017,0.0029,-0.0001,0.0026,0.0018
Zgharta_District:9238388096_R01C02,0.0082,0.015,-0.0112,-0.0247,-0.0037,-0.0078,-0.001,0.0012,0.0057,0.003,0.0016,-0.0023,0.0058,0.002,-0.0031,0.002,-0.0155,0.0031,-0.0001,-0.0036,-0.0005,0.0032,-0.0043,-0.0069,0.0038
Koura_District:9238388096_R02C01,0.0077,0.0145,-0.0135,-0.0215,-0.0059,-0.0101,-0.0006,-0.0014,-0.0021,0.0062,0.0044,-0.0072,0.0083,0.0034,-0.0093,0.0031,-0.0054,0.0003,-0.0033,-0.0018,-0.0018,0.0024,-0.0038,-0.002,0
Koura_District:9238388096_R02C02,0.0072,0.0149,-0.0147,-0.0247,-0.0066,-0.0122,-0.0012,-0.0002,-0.0003,0.0051,0.0032,-0.0027,0.0059,-0.0005,-0.0055,0.0069,-0.0029,0.0022,0.0036,0.0007,-0.002,-0.0018,0.0009,0.0057,0.0004
Koura_District:9238388096_R03C01,0.0081,0.0152,-0.0147,-0.0254,-0.0063,-0.0115,-0.0018,-0.004,0.0013,0.0081,0.0039,-0.0027,0.0074,0.0059,-0.007,-0.001,-0.009,0.0014,0.0041,-0.0018,0.0027,-0.0003,0,-0.0015,0.0014
Koura_District:9238388096_R03C02,0.0075,0.0137,-0.0125,-0.0249,-0.0039,-0.0114,-0.0017,-0.0047,0.001,0.0078,0.0018,-0.0039,0.0082,0.0003,-0.0101,0.0136,0.0081,-0.0001,-0.0004,-0.0049,-0.0009,-0.0032,0,0.0079,-0.0086
Koura_District:9238388096_R04C01,0.0084,0.0145,-0.0146,-0.0261,-0.0048,-0.011,0.0001,-0.0052,0.0017,0.0029,0.004,-0.0029,0.0088,0.0058,-0.0032,0.0114,-0.0035,-0.002,0.0026,-0.0058,0.0001,-0.0027,-0.0014,0.0016,0.0007
Koura_District:9238388096_R04C02,0.0075,0.0141,-0.0142,-0.0247,-0.0045,-0.0076,-0.0011,-0.0004,-0.0024,0.0016,0.0026,-0.0055,0.0083,0.004,-0.0063,-0.0048,-0.0129,0.0006,0.0055,0.0021,0.0012,0.0044,-0.0026,0.0065,0.0049
Koura_District:9238388096_R05C01,0.0067,0.0137,-0.0129,-0.0207,-0.0047,-0.0087,-0.0008,-0.0024,-0.0005,0.0033,0.0033,-0.0031,0.0069,-0.001,-0.0043,0.0166,0.0101,0.0025,0.0048,0.007,0.0041,-0.0006,0.0024,0.0005,0.0008
Koura_District:9238388096_R05C02,0.0072,0.0146,-0.0131,-0.0256,-0.0052,-0.0114,-0.003,-0.0049,0.0032,0.0088,0.0043,-0.0005,0.0086,0.0064,-0.0073,-0.0001,-0.0066,-0.0008,-0.0028,-0.0036,0.0021,0.0032,0.0036,0.0019,0.0006
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Koura_District:9238388100_R01C01,0.0075,0.0143,-0.0139,-0.0242,-0.0059,-0.0096,0.0004,-0.0028,0.0003,0.0056,0.0072,-0.0046,0.0056,0.0019,-0.0087,-0.0023,-0.0143,0.0015,-0.0014,-0.0047,-0.001,0.0014,0.0032,0.0066,-0.0014
Jalisciense, JMcB, Capsian20 like this post
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#5
Colons need replaced with commas.
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#6
(03-30-2024, 07:15 PM)AimSmall Wrote: Colons need replaced with commas.

Better?
AimSmall likes this post
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#7
Heatmap of samples compared to Davidski's Standard G25

Genetic Lineages of North Lebanon - Ancient Anatolians to Greek Orthodoxy compared to G25 Standard_heatmap
Qrts and Riverman like this post
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#8
Got some outliers...

Zgharta_District:9236445201_R05C01
Tripoli_District:923834812:R06C01

   

   
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#9
The two outliers...

   

Code:
Distance to:    Zgharta_District:9236445201_R05C01
0.06785610    India_RoopkundA:I7035__AD_935__Cov_38.78%
0.06850431    India_RoopkundA:I3342__AD_851__Cov_34.51%
0.07084696    India_RoopkundA:I6941__AD_943__Cov_38.59%
0.07388527    India_RoopkundA:I2868__AD_939__Cov_48.74%
0.07827765    Pakistan_SaiduSharif_H:I7722__BC_300__Cov_73.88%
0.07886379    India_RoopkundA:I3402__AD_832__Cov_10.78%
0.07898375    India_RoopkundA:I7036__AD_927__Cov_29.25%
0.08166700    India_RoopkundA:I3407__AD_880__Cov_9.46%
0.08233026    India_RoopkundA:I6946__AD_841__Cov_27.98%
0.08465522    India_RoopkundA:I3343__AD_841__Cov_17.62%
0.08838312    Iran_ShahrISokhta_BA2:I8728_enhanced__BC_2550__Cov_59.32%
0.08991624    India_RoopkundA:I6944__AD_825__Cov_27.18%
0.09105072    India_RoopkundA:I6942__AD_832__Cov_40.14%
0.09809854    India_RoopkundA:I3344__AD_843__Cov_9.65%
0.10462911    India_RoopkundA:I3346__AD_821__Cov_23.23%
0.10917252    Pakistan_Katelai_IA:I12470__BC_900__Cov_63.58%
0.11020080    India_RoopkundA:I3349__AD_849__Cov_11.83%
0.11034004    Pakistan_Katelai_IA:I12472__BC_900__Cov_11.72%
0.11142566    Pakistan_Loebanr_IA:I12981__BC_900__Cov_69.77%
0.11243027    India_RoopkundA:I3352__AD_784__Cov_50.45%
0.11409563    Pakistan_Aligrama_H:I8245__BC_247__Cov_68.89%
0.11422493    Pakistan_Katelai_IA:I12460__BC_900__Cov_59.30%
0.11488879    PAK_Katelai_LBA:614_Oss__BC_900__Cov_67.44%
0.11628246    Pakistan_Aligrama_IA:I6888__BC_797__Cov_59.53%
0.11853251    Pakistan_Aligrama_IA:I8219__BC_891__Cov_62.73%

Distance to:    Tripoli_District:9238348120_R06C01
0.06518165    India_RoopkundA:I6941__AD_943__Cov_38.59%
0.06580707    India_RoopkundA:I3342__AD_851__Cov_34.51%
0.06597377    India_RoopkundA:I7035__AD_935__Cov_38.78%
0.07307370    India_RoopkundA:I7036__AD_927__Cov_29.25%
0.07333402    India_RoopkundA:I2868__AD_939__Cov_48.74%
0.07364243    Pakistan_SaiduSharif_H:I7722__BC_300__Cov_73.88%
0.07596169    India_RoopkundA:I6946__AD_841__Cov_27.98%
0.07752470    India_RoopkundA:I3402__AD_832__Cov_10.78%
0.08194263    India_RoopkundA:I3407__AD_880__Cov_9.46%
0.08218610    India_RoopkundA:I3343__AD_841__Cov_17.62%
0.08268787    India_RoopkundA:I6944__AD_825__Cov_27.18%
0.08561983    India_RoopkundA:I6942__AD_832__Cov_40.14%
0.08707082    Iran_ShahrISokhta_BA2:I8728_enhanced__BC_2550__Cov_59.32%
0.09840086    India_RoopkundA:I3344__AD_843__Cov_9.65%
0.10083237    India_RoopkundA:I3346__AD_821__Cov_23.23%
0.10361339    India_RoopkundA:I3349__AD_849__Cov_11.83%
0.10711989    Pakistan_Katelai_IA:I12472__BC_900__Cov_11.72%
0.10723771    Pakistan_Katelai_IA:I12470__BC_900__Cov_63.58%
0.10825280    India_RoopkundA:I3352__AD_784__Cov_50.45%
0.11160374    Pakistan_Aligrama_H:I8245__BC_247__Cov_68.89%
0.11169229    Pakistan_Loebanr_IA:I12981__BC_900__Cov_69.77%
0.11410297    India_RoopkundA:I3406__AD_934__Cov_21.51%
0.11412195    Pakistan_Katelai_IA:I12460__BC_900__Cov_59.30%
0.11459670    PAK_Katelai_LBA:614_Oss__BC_900__Cov_67.44%
0.11569067    Pakistan_Aligrama_IA:I6888__BC_797__Cov_59.53%
Qrts and Manofthehour like this post
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#10
(03-30-2024, 08:06 PM)AimSmall Wrote: The two outliers...

There are some other studies there with several hundred modern samples. In your opinion, are these good enough?
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#11
(03-30-2024, 08:39 PM)teepean Wrote:
(03-30-2024, 08:06 PM)AimSmall Wrote: The two outliers...

There are some other studies there with several hundred modern samples. In your opinion, are these good enough?

I don't understand the question.  I haven't read the research yet.  Just playing with the data and spotted these obvious outliers and was curious about them.
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#12
Here's the plink dataset.

https://drive.google.com/file/d/1t1msHr4...sp=sharing
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#13
(03-30-2024, 08:42 PM)AimSmall Wrote:
(03-30-2024, 08:39 PM)teepean Wrote:
(03-30-2024, 08:06 PM)AimSmall Wrote: The two outliers...

There are some other studies there with several hundred modern samples. In your opinion, are these good enough?

I don't understand the question.  I haven't read the research yet.  Just playing with the data and spotted these obvious outliers and was curious about them.

The data is based on a HumanOmniExpress array and I am not sure if those have been used a source before. So I am asking if these could be used for G25 or any other calculations we have on this forum.
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#14
Did Davidski run them for you? I'd think he'd notice something being amiss. Perhaps not.

Guess I could pull your dataset and check the coverage vs say 1240K or HO. Not sure what SNPs the HumanOmniExpress array might be testing or not testing.

What paper are the samples from?
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#15
(03-30-2024, 09:01 PM)AimSmall Wrote: Did Davidski run them for you? I'd think he'd notice something being amiss. Perhaps not.

Guess I could pull your dataset and check the coverage vs say 1240K or HO. Not sure what SNPs the HumanOmniExpress array might be testing or not testing.

What paper are the samples from?

I sent them to David and his comment was "You would have to check the G25 coordinates and see if they behave as expected".

I haven't been able to find the paper yet and the data was released yesterday.
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