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If there are studies with data that hasnt been converted to G25 provide them here
(04-25-2024, 10:02 AM)Radko Wrote:
(04-25-2024, 06:55 AM)ilabv Wrote: For whatever reason his conversion is of poorer quality.

It's not "my" conversion but official genotype data uploaded to Poseidon (archaeogenetic data management provided by Max Planck Institute).

https://server.poseidon-adna.org/packages returns a JSON list of all packages

https://server.poseidon-adna.org/zip_file/<package_name> returns a complete zip file of the package with the given name

More about Poseidon: https://www.biorxiv.org/content/10.1101/...180v2.full

From "Network of large pedigrees reveals social practices of Avar communities" (Data Availability):

The haploid genotype data are available through the Poseidon framework via GitHub at https://github.com/poseidon-framework/co...rPedigrees

https://www.nature.com/articles/s41586-024-07312-4

Regardless, for some reason it is of poorer quality, with worse distances to other samples.
Reply
A female Viking warrior confirmed by genomics: https://onlinelibrary.wiley.com/doi/10.1002/ajpa.23308

Quote:Scaled

sweden:brk581,0.122929,0.128972,0.061094,0.056525,0.036007,0.021753,0.002585,0.021461,0.010635,0.010023,-0.008769,-0.004496,-0.018285,-0.006055,0.016558,-0.000928,-0.019036,0.009248,0.019483,-5e-04,-0.00287,-0.002597,-0.012818,0.023618,0.006347

Unscaled

sweden:brk581,0.0108,0.0127,0.0162,0.0175,0.0117,0.0078,0.0011,0.0093,0.0052,0.0055,-0.0054,-0.003,-0.0123,-0.0044,0.0122,-0.0007,-0.0146,0.0073,0.0155,-0.0004,-0.0023,-0.0021,-0.0104,0.0196,0.0053
Capsian20 and Jalisciense like this post
Reply
(04-25-2024, 06:25 PM)ilabv Wrote: A female Viking warrior confirmed by genomics: https://onlinelibrary.wiley.com/doi/10.1002/ajpa.23308

Quote:Scaled

sweden:brk581,0.122929,0.128972,0.061094,0.056525,0.036007,0.021753,0.002585,0.021461,0.010635,0.010023,-0.008769,-0.004496,-0.018285,-0.006055,0.016558,-0.000928,-0.019036,0.009248,0.019483,-5e-04,-0.00287,-0.002597,-0.012818,0.023618,0.006347

Unscaled

sweden:brk581,0.0108,0.0127,0.0162,0.0175,0.0117,0.0078,0.0011,0.0093,0.0052,0.0055,-0.0054,-0.003,-0.0123,-0.0044,0.0122,-0.0007,-0.0146,0.0073,0.0155,-0.0004,-0.0023,-0.0021,-0.0104,0.0196,0.0053

Target: sweden:brk581
Distance: 5.4044% / 0.05404428
48.6 Steppe_Pastoralist
36.8 Early_European_Farmer
14.6 Western_Hunter-Gatherer

Distance to: sweden:brk581
0.03556301 English:England7
0.03593477 Irish:Irish34
0.03681483 Norwegian:NOR101
0.03690756 English_Cornwall:HG00252
0.03696842 Orcadian:HGDP00796
0.03760075 Dutch:GSM1633992
0.03760827 Dutch:GSM1633983
0.03780249 English:English3
0.03792237 Irish:Irish45
0.03813349 Dutch:Netherlands47
0.03817504 English:England8
0.03848399 Dutch:GSM567042
0.03852713 Norwegian:GSM1550622
0.03876620 Dutch:Netherlands49
0.03893304 Dutch:Netherlands4
0.03897084 Dutch:Netherlands23
0.03900581 German:German27
0.03951968 Afrikaner:AFR081
0.03955148 Afrikaner:AFR035
0.03965877 English:England14
0.03982867 Danish:GSM1985807
0.03983378 Dutch:Netherlands7
0.03983752 Danish:435
0.03984987 Danish:GSM1985841
0.03992170 Dutch:GSM1633938
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
Reply
Interesting sample

Target: sweden:brk581
Distance: 2.1044% / 0.02104428 | ADC: 0.25x RC
30.6 England_Saxon_Cambridgeshire
20.2 Spain_IA_Celt_o
12.2 SWE_Uppsala_Late_VA
9.0 Bell_Beaker_England_low_res
7.4 Slovakia_LIA_LaTene
6.8 Czech_EBA_Unetice
6.0 England_EarlyMedieval_Saxon
3.2 SWE_N_Vattenledningen
2.2 Germany_EarlyMedieval.SG
1.6 India_RoopkundA
0.8 Russia_Chita_BA.SG
Capsian20 likes this post
Reply
Would it be possible to get G25 coordinates for these samples?

https://www.ebi.ac.uk/ena/browser/view/PRJEB73826
Capsian20, Bukva_, ilabv And 1 others like this post
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Ancient genomes reveal insights into ritual life at Chichén Itzá: https://www.ebi.ac.uk/ena/browser/view/PRJEB73567

Quote:Scaled

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maya:YCH006.A0102.1240K,0.045529,-0.323954,0.110873,0.088179,-0.102788,-0.012829,-0.289768,-0.335524,0.008181,-0.018224,-0.003248,0.001049,0.003122,0.017891,-0.002714,-0.009016,0.000261,-0.000253,-0.004022,-0.020635,-0.006489,0.0115,-0.007888,0.003253,-0.001437
maya:YCH009.B0101.1240K,0.050082,-0.307705,0.121056,0.091732,-0.104943,-0.020359,-0.279193,-0.331371,-0.011862,-0.020957,-0.005684,0.002098,0.001487,0.022708,0.001493,0.001061,0.005867,-0.001394,0.003771,-0.001751,0.004617,0.002968,0.003451,0.000964,-0.000599
maya:YCH011.A0102.1240K,0.052359,-0.322938,0.121056,0.098192,-0.10802,-0.01506,-0.294468,-0.348909,-0.013703,-0.016948,-0.003735,0.001798,-0.002973,0.02491,-0.003529,0.00769,0.010431,-0.002407,-0.00352,-0.002001,-0.001248,-0.000371,-0.005053,-0.004097,-0.001078
maya:YCH012.A0102.1240K,0.05805,-0.320907,0.112382,0.089148,-0.109559,-0.018128,-0.287418,-0.344063,-0.016157,-0.016583,-0.012829,-0.00045,-0.000149,0.020781,-0.005157,0.005304,0.004042,-0.001394,-0.003142,0.001251,0.008485,0.004575,-0.005053,-0.006627,0.006945
maya:YCH015.A0101.1240K,0.053497,-0.316845,0.110119,0.091086,-0.10802,-0.013945,-0.280838,-0.339909,-0.009613,-0.019317,0.002111,-0.003447,0.003568,0.026974,-0.006379,-0.001061,0.004694,-0.001774,-0.001131,0.003252,-0.006364,0.003215,-0.00456,0.001566,-0.002994
maya:YCH023.A0101.1240K,0.053497,-0.322938,0.122564,0.091086,-0.109251,-0.02008,-0.292588,-0.347524,-0.018407,-0.020046,-0.00341,0.002847,0.001635,0.026424,-0.003122,0.004773,0.000782,-0.004941,-0.000251,-0.002126,-0.001497,0.003957,0.002095,0.004579,-0.001557
maya:YCH024.A0101.1240K,0.050082,-0.317861,0.116907,0.091409,-0.114791,-0.013666,-0.301989,-0.346601,-0.016362,-0.013485,-0.006658,-0.008243,-0.000446,0.021744,-0.002443,-0.000398,0.003129,0.000253,-0.003771,-0.001376,0.000998,0.011871,-0.007395,0,0.001078
maya:YCH027.A0101.1240K,0.055773,-0.310752,0.124073,0.098192,-0.111098,-0.011435,-0.294468,-0.350755,-0.008795,-0.010934,0.005359,0.000599,0.000149,0.01913,-0.012079,0.000928,0.006258,-0.003167,-0.00352,-0.002251,0.000749,0.001855,-0.00037,0.000361,0.002155
maya:YCH031.A0101.1240K,0.050082,-0.320907,0.114645,0.090117,-0.10525,-0.009203,-0.291883,-0.348447,-0.012476,-0.014761,-0.009256,-0.000749,0.001189,0.024497,-0.002986,0.010209,0.007171,0.00266,0.003017,5e-04,0.000499,0.004204,-0.001602,-0.004579,-0.001916
maya:YCH033.A0101.1240K,0.052359,-0.317861,0.116907,0.099161,-0.110482,-0.016176,-0.295173,-0.344063,-0.007158,-0.020046,-0.004222,0.003447,0.003271,0.01968,-0.0076,0.009944,0.009779,-0.001647,0.00088,-0.002376,-0.008984,0.000371,-0.007025,-0.001205,0.004071
maya:YCH034.A0101.1240K,0.050082,-0.327,0.119547,0.09367,-0.116637,-0.015897,-0.286948,-0.336448,-0.013908,-0.020228,0.002598,-0.006894,0.006987,0.017891,-0.009772,0.00769,0.000652,-0.003041,-0.000503,0.001501,0.00025,0.006554,0.005423,0.00964,0.002994
maya:YCH035.B0101.1240K,0.046667,-0.303643,0.117285,0.098838,-0.100326,-0.014781,-0.278723,-0.323525,-0.015748,-0.01385,-0.006496,-0.003897,0.004311,0.016652,-0.002579,0.008618,0.005998,0.003547,0.011187,0.002626,-0.000749,0.005688,-0.001232,0.003735,-0.000838
maya:YCH036.A0101.1240K,0.048944,-0.320907,0.112759,0.089471,-0.113867,-0.019243,-0.289768,-0.341755,-0.008795,-0.020228,-0.006496,-0.004046,-0.00223,0.025735,-0.012622,0.011005,0.010952,-0.000633,-0.002011,0.001126,-0.00262,0.01286,-0.003451,-0.005061,0.005029
maya:YCH039.A0101.1240K,0.060326,-0.317861,0.12181,0.099807,-0.115406,-0.019243,-0.279663,-0.336909,-0.010022,-0.019681,-0.003248,-0.005245,0.00446,0.02202,-0.008686,0.00358,0.010561,0.001014,0.002514,0.001751,0.002995,0.003462,-0.001232,-0.000241,-0.009819
maya:YCH040.A0101.1240K,0.053497,-0.310752,0.116153,0.088502,-0.122177,-0.023148,-0.289063,-0.342217,-0.008385,-0.017312,-0.005684,0.000749,-0.004162,0.025047,-0.002172,0.010872,0.004042,0.000253,0.006913,-0.002751,-0.003119,0.004328,-0.001972,0.00012,0.004311
maya:YCH041.1240K,0.055773,-0.323954,0.110873,0.089794,-0.111098,-0.019522,-0.295173,-0.346832,-0.01718,-0.018224,-0.005196,0.00045,-0.003568,0.024634,-0.005429,0.005701,0.008084,0.00076,0.001006,-0.000625,-0.002246,0.004081,-0.004067,0.001205,0.002874
maya:YCH042.B0101.1240K,0.045529,-0.307705,0.118039,0.091409,-0.11079,-0.022869,-0.281308,-0.332986,-0.009613,-0.009659,-0.003897,0.004946,0.00223,0.018854,-0.00665,0.008221,0.001695,0.00152,0.002388,-0.004127,0.003369,0.007419,-0.000863,0.00012,-0.008502
maya:YCH043.A0101.1240K,0.062603,-0.322938,0.109365,0.093024,-0.11079,-0.024821,-0.286713,-0.340601,-0.018407,-0.018406,-0.000325,-0.00045,0.003568,0.01913,-0.006515,0.010475,0.004563,-0.000633,0.000251,-0.001876,0.000499,0.004204,-0.003328,-0.003735,-0.001796
maya:YCH045.A0101.1240K,0.055773,-0.31583,0.120301,0.09044,-0.11756,-0.016455,-0.292353,-0.345678,-0.016566,-0.014032,-0.006496,-0.003447,0.008771,0.022432,-0.004479,0.006364,0.005346,-0.00266,-0.001885,0.000125,-0.000125,0.00915,-0.001972,-0.00241,0.000479
maya:YCH046.A0101.1240K,0.047806,-0.304659,0.119924,0.093993,-0.110174,-0.006972,-0.279898,-0.335755,-0.011044,-0.013121,-0.007795,-0.001649,-0.001041,0.024634,-0.00285,0.00305,0.007953,-0.0019,0.003268,-0.002626,0.001622,0.006925,-0.003821,0.00723,0.00012
maya:YCH047.B0101.1240K,0.052359,-0.303643,0.114268,0.094639,-0.102481,-0.021475,-0.287888,-0.342909,-0.002045,-0.015855,0.001624,3e-04,-0.006095,0.016652,-0.010315,0.009679,-0.002999,0.001394,-0.002388,0.008379,-0.003619,0.007419,-0.0053,0.001446,-0.002395
maya:YCH049.A0101.1240K,0.042115,-0.30669,0.118416,0.094962,-0.104943,-0.023706,-0.287653,-0.33414,-0.012067,-0.014032,-0.012829,0.004046,-0.000149,0.017065,-0.006379,0.009414,0.003912,0.003294,0.006411,-0.001751,0.004617,0.000247,0.003081,-0.001084,-0.001676
maya:YCH050.A0101.1240K,0.054635,-0.316845,0.119547,0.098838,-0.119407,-0.01757,-0.300109,-0.35237,-0.012885,-0.019864,-0.00341,-0.004946,0.005054,0.018166,-0.011265,0.003182,0.007693,-0.002154,0.001885,-0.001876,0.007237,-0.000124,0.004067,0.00735,-0.000359
maya:YCH051.A0101.1240K,0.045529,-0.324969,0.112005,0.093347,-0.109251,-0.020359,-0.297993,-0.350293,-0.014317,-0.014032,-0.005196,-0.006594,-0.001041,0.015138,-0.015201,0.005038,-0.000913,0.000507,0.001634,-0.004002,0.000749,-0.002968,-0.005669,0.002289,-0.001437
maya:YCH053.A0101.1240K,0.052359,-0.318876,0.120301,0.093024,-0.109559,-0.019522,-0.290003,-0.348909,-0.014112,-0.017677,0.002436,0.003297,-0.00223,0.01445,-0.008958,0.008751,0.004955,-0.00038,-0.000503,-0.00988,-0.003369,0.00371,0.010723,0.003735,-0.003113
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maya:YCH055.A0101.1240K,0.053497,-0.318876,0.116153,0.095931,-0.106481,-0.021196,-0.281073,-0.338294,-0.011453,-0.016219,0.000974,-0.007194,0.007433,0.022983,-0.012079,0.000265,0.004824,0.000253,-0.005531,-0.001501,-0.002246,0.002844,-0.004807,-0.00482,0.000838
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maya:YCH064.B0101.1240K,0.056912,-0.291457,0.114268,0.093993,-0.090786,-0.009203,-0.261097,-0.306449,-0.019839,-0.014032,-0.015102,0.001349,0.00446,0.032204,-0.002579,0.005436,0.007693,0.003294,0.011187,0.000875,-0.002496,0.002226,0.000493,-0.002651,0.005269

Raw

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maya:YCH002.A0102.1240K,0.0046,-0.0312,0.0291,0.0312,-0.0369,-0.0075,-0.1243,-0.1516,-0.0043,-0.0118,0.0001,-0.0011,0.0002,0.0202,-0.0011,0.0005,0.0039,-0.003,-0.0003,-0.0036,0.003,0.0035,-0.0047,0.0017,-0.0025
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maya:YCH004.A0102.1240K,0.0044,-0.031,0.0307,0.0286,-0.0384,-0.0054,-0.122,-0.1488,-0.0097,-0.0074,0,0.0038,0.0011,0.0187,-0.0045,-0.0012,0.0049,0.0041,-0.0008,-0.002,-0.0069,0.0042,-0.0005,0.0013,0.0028
maya:YCH006.A0102.1240K,0.004,-0.0319,0.0294,0.0273,-0.0334,-0.0046,-0.1233,-0.1454,0.004,-0.01,-0.002,0.0007,0.0021,0.013,-0.002,-0.0068,0.0002,-0.0002,-0.0032,-0.0165,-0.0052,0.0093,-0.0064,0.0027,-0.0012
maya:YCH009.B0101.1240K,0.0044,-0.0303,0.0321,0.0284,-0.0341,-0.0073,-0.1188,-0.1436,-0.0058,-0.0115,-0.0035,0.0014,0.001,0.0165,0.0011,0.0008,0.0045,-0.0011,0.003,-0.0014,0.0037,0.0024,0.0028,0.0008,-0.0005
maya:YCH011.A0102.1240K,0.0046,-0.0318,0.0321,0.0304,-0.0351,-0.0054,-0.1253,-0.1512,-0.0067,-0.0093,-0.0023,0.0012,-0.002,0.0181,-0.0026,0.0058,0.008,-0.0019,-0.0028,-0.0016,-0.001,-0.0003,-0.0041,-0.0034,-0.0009
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VladMC, Capsian20, miquirumba And 5 others like this post
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(04-27-2024, 09:28 PM)Radko Wrote: Would it be possible to get G25 coordinates for these samples?

https://www.ebi.ac.uk/ena/browser/view/PRJEB73826

Unveiling Hunnic Legacy: Decoding Elite Presence in Poland through a Unique Child's Burial with Modified Cranium: https://www.ebi.ac.uk/ena/browser/view/PRJEB73826

Code:
Scaled

poland_huns:czu001,0.121791,0.133034,0.075801,0.070737,0.042469,0.017012,0.00188,0.011307,0.006749,-0.002369,-0.005196,0.004946,-0.013379,-0.013762,0.021444,0.025722,0.004433,-0.003294,-0.002891,0.008754,0.013102,0.000618,-0.002095,0.019882,-0.001197

Raw

poland_huns:czu001,0.0107,0.0131,0.0201,0.0219,0.0138,0.0061,0.0008,0.0049,0.0033,-0.0013,-0.0032,0.0033,-0.009,-0.01,0.0158,0.0194,0.0034,-0.0026,-0.0023,0.007,0.0105,0.0005,-0.0017,0.0165,-0.001
Арсен, Jalisciense, Megalophias And 7 others like this post
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@ilabv

Hello, I couldn’t find G25 coordinates on the Internet for samples MK5007, I6270, VEK008, I6278, MK5012, I2057, I6281, I1720, OSS002, I1723, I2051, VEK006
from this famous work
https://www.nature.com/articles/s41467-018-08220-8
probably due to their low coverage, but I would still like to have these coordinates on hand
Capsian20 likes this post
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(04-30-2024, 03:46 PM)Арсен Wrote: @ilabv

Hello, I couldn’t find G25 coordinates on the Internet for samples MK5007, I6270, VEK008, I6278, MK5012, I2057, I6281, I1720, OSS002, I1723, I2051, VEK006
from this famous work
https://www.nature.com/articles/s41467-018-08220-8
probably due to their low coverage, but I would still like to have these coordinates on hand

Davidski usually doesn't convert samples below 0.12x coverage, this may be why they are missing. If there are samples equal to or above this then I can get them. Let me know
Capsian20 and Арсен like this post
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(05-05-2024, 02:31 AM)Radko Wrote: From upcoming Avar period Leobersdorf, Modling, etc. HistoGenes study - https://server.poseidon-adna.org/zip_fil...AvarPeriod

Global25 coordinates - https://drive.google.com/file/d/12wMC6OI...p=drivesdk

I would recommend using my conversion. Yours have noticeably high distances.
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If any of the new studies have raw data please notify me and I will convert. Old studies with not G25 are welcome too.
Jalisciense and Capsian20 like this post
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could you try converting these 9 neolithic maltese samples from this study?
https://www.sciencedirect.com/science/ar...2222007059

the samples should be here
https://www.ebi.ac.uk/ena/browser/view/PRJNA778930
or here
https://www.ncbi.nlm.nih.gov/bioproject/778930
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