If there are studies with data that hasnt been converted to G25 provide them here

[ilabv]

Millennium-Old Pathogenic Mendelian Mutation Discovery for Multiple Osteochondromas from a Gaelic Medieval Graveyard

ENA Browser (ebi.ac.uk)

If these have been converted please reply with the G25 coordinates. I checked Ajeje's linked G25 file and they weren't there. I checked the supplements for coverage but I couldn't find it.

Idk if the coverage will be enough but I could try them

[Norfern-Ostrobothnian]

Human auditory ossicles as an alternative optimal source of ancient DNA
https://genome.cshlp.org/content/30/3/427
https://www.ebi.ac.uk/ena/browser/view/PRJEB32751
https://www.mediafire.com/file/n35lyr87h...0.zip/file

[Norfern-Ostrobothnian]

Coordinates for those samples

Code:

Brazil_Late_Holocene:I18120_I18121,0.05805,-0.293488,0.115399,0.093347,-0.105558,-0.009203,-0.289533,-0.344293,-0.01309,-0.02442,0.009906,-0.012139,-0.007582,0.022708,-0.0019,-0.000398,0.009257,0.007348,0.006411,0.017383,0.011979,0,-0.006655,-0.008555,-0.008622
Brazil_Late_Holocene:I18122_I18123,0.050082,-0.302628,0.116153,0.100776,-0.105866,-0.024821,-0.295878,-0.340832,-0.008999,-0.022597,-0.016401,0.005545,0.000595,0.027937,0.004614,0.008884,0.010431,-0.003041,0.002891,0.009254,-0.000499,-0.002349,0.000986,0.004217,-0.003233
Brazil_Late_Holocene:I18124_I18125,0.052359,-0.308721,0.11389,0.102391,-0.108328,-0.020359,-0.290943,-0.341755,-0.01268,-0.018041,0.000812,-0.001199,-0.00223,0.017616,-0.00475,-0.003713,0.007562,-0.002407,0.010307,0.011506,-0.00861,0.00136,-0.002588,-0.01458,-0.009221
England_Roman:I14491_I14492,0.126344,0.13405,0.05242,0.052003,0.041238,0.008646,-0.003055,0.006923,0.011044,0.011481,-0.003085,0.008093,-0.013231,-0.020919,0.020222,0.012463,0.00339,-0.002154,0.004399,0.011506,-0.000125,-0.004575,0.002465,0.010363,0.002874
Italy_MBA:I18130_I18131,0.119514,0.161469,0.039598,-0.045866,0.068628,-0.021753,0.002115,0.000923,0.043973,0.079819,0.004384,0.017984,-0.02334,-0.004679,-0.014386,-0.014983,-0.008345,0.005574,0.008673,-0.014632,0.007736,0.003091,-0.006162,-0.010122,-0.0097
Italy_MBA:I18132_I18133,0.127482,0.165531,0.038466,-0.047158,0.053856,-0.028447,-0.011751,0.000692,0.040496,0.077815,0.001137,0.014987,-0.020069,-0.005092,-0.015879,-0.010077,0.000913,0.003801,0.005908,-0.013381,-0.000374,0.001113,-0.007395,-0.01205,0.000838
Pakistan_Katelai_IA:I14456_I14457,0.053497,-0.035544,-0.143683,0.083334,-0.093248,0.048527,-0.002115,0.004615,0.0045,0.000547,-0.009906,0.002248,-0.001784,0.011147,0.008686,-0.00358,-0.015646,-0.003167,0.002891,-0.005378,0.009858,-0.008161,0.003204,0,0.000359
Romania_Glavanesti_BA:I11954_I11955,0.117238,0.071087,0.038089,0.093993,-0.027697,0.035698,-0.007285,-0.011076,-0.043768,-0.055218,0.005196,-0.001199,0.002676,-0.020506,0.023751,0.002254,-0.015776,-0.004434,-0.001634,0.001251,-0.012603,0.006925,0.009367,0.013737,0.00479
Russia_Fofonovo_EN:I14460_I14461,0.027318,-0.426522,0.085229,-0.01292,-0.080323,-0.0502,0.020446,0.023999,0.01493,0.012392,-0.0177,-0.003147,0.001338,-0.006881,0.002986,0.000796,0.000391,-0.003041,0.005656,0.022636,-0.031569,0.003957,-0.011832,-0.008676,0.006227
Slovakia_Blatne_EBA:I11952_I11953,0.133173,0.117801,0.065619,0.068799,0.028621,0.025658,0.001175,0.001846,-0.008795,-0.021322,0.004709,0.002698,-0.00446,-0.012524,0.018594,0.022673,0.020079,-0.005954,-0.002891,0.002876,-0.003868,0.002473,-0.000863,0.000361,0.00467
Turkmenistan_C_Geoksyur:I14458_I14459,0.064879,0.080227,-0.119924,0.013566,-0.109867,0.013387,0.002585,-0.010846,-0.071583,-0.051208,-0.003573,0.003897,-0.008325,-0.003303,0.027144,0.024131,-0.008996,0.000887,0.002388,-0.02176,0.006988,-0.013973,-0.006902,-0.020605,0.016406

[ilabv]

Ancient DNA and Paleoproteomic Analysis on Roman Imperial-Era Individuals from Histria, Romania: https://www.researchgate.net/publication...ia_Romania

Scaled

histria:SRR26291258,0.117238,0.11577,0.028661,0.016473,-0.001231,0.017012,0.004935,-0.009461,-0.019634,-0.020228,-0.01088,0.003297,-0.019029,-0.012799,0.00095,-0.001326,0.009127,-0.00038,0.000628,0.003752,0.007112,0.014838,0.015159,0.001807,-0.011496
histria:SRR26291260,0.114961,0.153345,-0.013576,-0.061047,0.004616,-0.021196,0.009635,-0.006923,0.009204,0.025878,-0.005684,0.005695,-0.004906,-0.011973,-0.002714,0.007558,0.018254,0.00266,0.00817,0.002501,-0.004866,-0.002597,0.002711,-0.001084,-0.000479
histria:SRR26291262,0.111547,0.157407,-0.033941,-0.076874,0.011694,-0.042391,0,-0.005769,0.008999,0.031345,0.016239,0.013788,-0.009068,0.000826,-0.021715,-0.019093,-0.004433,0.001394,-0.00264,-0.014007,-0.013975,-0.008408,-0.004067,-0.001807,0.008622
histria:SRR26291264,0.122929,0.140143,0.017348,-0.017442,0.032314,-0.006136,-0.010575,-0.004384,0.004704,0.023691,0.005684,0.002248,-0.009812,-0.00812,-0.000679,0.007027,0.007302,0.005194,0.004148,-0.006878,-0.010107,0.006059,-0.006162,0.004217,-0.001676

Raw

histria:SRR26291258,0.0103,0.0114,0.0076,0.0051,-0.0004,0.0061,0.0021,-0.0041,-0.0096,-0.0111,-0.0067,0.0022,-0.0128,-0.0093,0.0007,-0.001,0.007,-0.0003,0.0005,0.003,0.0057,0.012,0.0123,0.0015,-0.0096
histria:SRR26291260,0.0101,0.0151,-0.0036,-0.0189,0.0015,-0.0076,0.0041,-0.003,0.0045,0.0142,-0.0035,0.0038,-0.0033,-0.0087,-0.002,0.0057,0.014,0.0021,0.0065,0.002,-0.0039,-0.0021,0.0022,-0.0009,-0.0004
histria:SRR26291262,0.0098,0.0155,-0.009,-0.0238,0.0038,-0.0152,0,-0.0025,0.0044,0.0172,0.01,0.0092,-0.0061,0.0006,-0.016,-0.0144,-0.0034,0.0011,-0.0021,-0.0112,-0.0112,-0.0068,-0.0033,-0.0015,0.0072
histria:SRR26291264,0.0108,0.0138,0.0046,-0.0054,0.0105,-0.0022,-0.0045,-0.0019,0.0023,0.013,0.0035,0.0015,-0.0066,-0.0059,-0.0005,0.0053,0.0056,0.0041,0.0033,-0.0055,-0.0081,0.0049,-0.005,0.0035,-0.0014

[ilabv]

Millennium-old pathogenic Mendelian mutation discovery for multiple osteochondromas from a Gaelic Medieval graveyard: https://www.nature.com/articles/s41431-022-01219-2

Scaled

irish:HAN197,0.127482,0.137096,0.058831,0.048127,0.025235,0.015618,-0.00094,0,0.004295,0.004191,-0.004547,0.008692,-0.012487,-0.015414,0.025651,0.003713,-0.012386,0.001647,0.00088,0.002001,0.004367,0.007048,0.000123,0.003494,0.002036
irish:HAN331,0.12862,0.137096,0.067127,0.055879,0.038161,0.020917,0.004935,0.004615,0.00409,0.006378,-0.003735,0.006894,-0.012487,-0.006331,0.021172,-0.002254,-0.022426,0.00228,0.004902,0.004252,0.006863,-0.00272,-0.000986,0.002892,0.002395

Raw

irish:HAN197,0.0112,0.0135,0.0156,0.0149,0.0082,0.0056,-0.0004,0,0.0021,0.0023,-0.0028,0.0058,-0.0084,-0.0112,0.0189,0.0028,-0.0095,0.0013,0.0007,0.0016,0.0035,0.0057,0.0001,0.0029,0.0017
irish:HAN331,0.0113,0.0135,0.0178,0.0173,0.0124,0.0075,0.0021,0.002,0.002,0.0035,-0.0023,0.0046,-0.0084,-0.0046,0.0156,-0.0017,-0.0172,0.0018,0.0039,0.0034,0.0055,-0.0022,-0.0008,0.0024,0.002

[ph2ter]

Ancient DNA and Paleoproteomic Analysis on Roman Imperial-Era Individuals from Histria, Romania: https://www.researchgate.net/publication...ia_Romania

Scaled

histria:SRR26291258,0.117238,0.11577,0.028661,0.016473,-0.001231,0.017012,0.004935,-0.009461,-0.019634,-0.020228,-0.01088,0.003297,-0.019029,-0.012799,0.00095,-0.001326,0.009127,-0.00038,0.000628,0.003752,0.007112,0.014838,0.015159,0.001807,-0.011496
histria:SRR26291260,0.114961,0.153345,-0.013576,-0.061047,0.004616,-0.021196,0.009635,-0.006923,0.009204,0.025878,-0.005684,0.005695,-0.004906,-0.011973,-0.002714,0.007558,0.018254,0.00266,0.00817,0.002501,-0.004866,-0.002597,0.002711,-0.001084,-0.000479
histria:SRR26291262,0.111547,0.157407,-0.033941,-0.076874,0.011694,-0.042391,0,-0.005769,0.008999,0.031345,0.016239,0.013788,-0.009068,0.000826,-0.021715,-0.019093,-0.004433,0.001394,-0.00264,-0.014007,-0.013975,-0.008408,-0.004067,-0.001807,0.008622
histria:SRR26291264,0.122929,0.140143,0.017348,-0.017442,0.032314,-0.006136,-0.010575,-0.004384,0.004704,0.023691,0.005684,0.002248,-0.009812,-0.00812,-0.000679,0.007027,0.007302,0.005194,0.004148,-0.006878,-0.010107,0.006059,-0.006162,0.004217,-0.001676

Raw

histria:SRR26291258,0.0103,0.0114,0.0076,0.0051,-0.0004,0.0061,0.0021,-0.0041,-0.0096,-0.0111,-0.0067,0.0022,-0.0128,-0.0093,0.0007,-0.001,0.007,-0.0003,0.0005,0.003,0.0057,0.012,0.0123,0.0015,-0.0096
histria:SRR26291260,0.0101,0.0151,-0.0036,-0.0189,0.0015,-0.0076,0.0041,-0.003,0.0045,0.0142,-0.0035,0.0038,-0.0033,-0.0087,-0.002,0.0057,0.014,0.0021,0.0065,0.002,-0.0039,-0.0021,0.0022,-0.0009,-0.0004
histria:SRR26291262,0.0098,0.0155,-0.009,-0.0238,0.0038,-0.0152,0,-0.0025,0.0044,0.0172,0.01,0.0092,-0.0061,0.0006,-0.016,-0.0144,-0.0034,0.0011,-0.0021,-0.0112,-0.0112,-0.0068,-0.0033,-0.0015,0.0072
histria:SRR26291264,0.0108,0.0138,0.0046,-0.0054,0.0105,-0.0022,-0.0045,-0.0019,0.0023,0.013,0.0035,0.0015,-0.0066,-0.0059,-0.0005,0.0053,0.0056,0.0041,0.0033,-0.0055,-0.0081,0.0049,-0.005,0.0035,-0.0014

They are very diverse, but as expected for a border zone:

[ph2ter]

Millennium-old pathogenic Mendelian mutation discovery for multiple osteochondromas from a Gaelic Medieval graveyard: https://www.nature.com/articles/s41431-022-01219-2

Scaled

irish:HAN197,0.127482,0.137096,0.058831,0.048127,0.025235,0.015618,-0.00094,0,0.004295,0.004191,-0.004547,0.008692,-0.012487,-0.015414,0.025651,0.003713,-0.012386,0.001647,0.00088,0.002001,0.004367,0.007048,0.000123,0.003494,0.002036
irish:HAN331,0.12862,0.137096,0.067127,0.055879,0.038161,0.020917,0.004935,0.004615,0.00409,0.006378,-0.003735,0.006894,-0.012487,-0.006331,0.021172,-0.002254,-0.022426,0.00228,0.004902,0.004252,0.006863,-0.00272,-0.000986,0.002892,0.002395

Raw

irish:HAN197,0.0112,0.0135,0.0156,0.0149,0.0082,0.0056,-0.0004,0,0.0021,0.0023,-0.0028,0.0058,-0.0084,-0.0112,0.0189,0.0028,-0.0095,0.0013,0.0007,0.0016,0.0035,0.0057,0.0001,0.0029,0.0017
irish:HAN331,0.0113,0.0135,0.0178,0.0173,0.0124,0.0075,0.0021,0.002,0.002,0.0035,-0.0023,0.0046,-0.0084,-0.0046,0.0156,-0.0017,-0.0172,0.0018,0.0039,0.0034,0.0055,-0.0022,-0.0008,0.0024,0.002

[ilabv]

https://www.ebi.ac.uk/ena/browser/view/PRJNA1023923 - "Shotgun sequencing of ten archaeological individuals from the archaeological site of Histria, Romania"

Was just posted but thanks

[Арсен]

https://www.ebi.ac.uk/ena/browser/view/PRJNA1023923 - "Shotgun sequencing of ten archaeological individuals from the archaeological site of Histria, Romania"

Was just posted but thanks

I'm sorry, I didn't read the messages above, I didn't notice

[AimSmall]

For whoever asked about the Histria haplogroups. None of the samples had Y DNA calls. May have been all female, or else we didn't get the Y samples.

Coverage Info

histria SRR26291258: Homozygous SNPs: 157996 (12.81%)
histria SRR26291260: Homozygous SNPs: 149077 (12.09%)
histria SRR26291262: Homozygous SNPs: 131933 (10.70%)
histria SRR26291264: Homozygous SNPs: 546434 (44.32%)

[Radko]

New Global25 coordinates (Avar, Sarmatian, Gepid, etc. samples including labels from "Network of large pedigrees reveals social practices of Avar communities" study) based on the official genotype data - https://drive.google.com/file/d/1xGPQI6c...sp=sharing

Official genotype data - https://server.poseidon-adna.org/zip_fil...rPedigrees

[HDG33]

https://journals.plos.org/plosone/articl...ne.0299958

[Capsian20]

A female Viking warrior confirmed by genomics
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5724682/
https://en.wikipedia.org/wiki/Birka_grave_Bj_581
Is will be great to know Admixture DNA this female warrior

[ilabv]

A female Viking warrior confirmed by genomics
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5724682/
https://en.wikipedia.org/wiki/Birka_grave_Bj_581
Is will be great to know Admixture DNA this female warrior

Is the data available for this?

[ilabv]

https://journals.plos.org/plosone/articl...ne.0299958

Where is the data?