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03-03-2024, 01:04 PM
(This post was last modified: 03-03-2024, 01:18 PM by ionix.)
(03-03-2024, 12:01 PM)teepean Wrote: The paper says the raw data has been published at accession PRJEB31781. Does anyone know how to match the names from PRJEB71330 to this one?
You can use "Table S2" to match between "SampleID" and "Accession number"
which is "secondary_sample_accession" on ENA
https://ars.els-cdn.com/content/image/1-...-mmc3.xlsx
https://www.ebi.ac.uk/ena/browser/view/PRJEB31781
SampleID | Accession number
MH2_LT | ERS16515249
MH2_LT | ERS16602377
MH2_LT | ERS16602378
MH2_LT | ERS16602379
MH2_LT | ERS16602380
AS_EMT | ERS16602271
AS_EMT | ERS16602310
AS_EMT | ERS16602374
AS_EMT | ERS16602375
AS_EMT | ERS16602376
MH3_LT | ERS16602224
MH3_LT | ERS16602266
MH3_LT | ERS16602267
MH3_LT | ERS16602268
MH3_LT | ERS16602270
MH1_LT | ERS16602219
MH1_LT | ERS16602220
MH1_LT | ERS16602222
MH1_LT | ERS16515248
MH1_LT | ERS16602223
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(03-03-2024, 10:51 AM)Qrts Wrote: Here are the coords:
Quote:AS_EMT2,0.084229,0.126941,-0.068636,-0.064277,-0.03139,-0.030678,-0.005405,-0.013846,-0.015339,-0.006378,0.002273,-0.002698,0.010406,-0.007982,0.001357,0.02254,0.005476,-0.000127,0.005405,-0.006503,-0.012353,-0.008656,-0.00456,0.000723,0.007664
MH2_LT2,0.084229,0.118817,-0.066373,-0.046512,-0.033237,-0.011992,0.00329,-0.001385,-0.01493,-0.007107,0.002436,-0.008842,0.020069,0.005092,0.002307,0.00411,-0.020861,0.002154,0.002891,-0.005878,-0.006613,0.000618,-0.005546,0.001325,0.007784
MH1_LT2,0.086506,0.128972,-0.067127,-0.064277,-0.03139,-0.012829,-0.001175,-0.006692,-0.000614,-0.005103,0.003897,-0.014987,0.023637,-0.003441,0.001493,0.001856,-0.019558,-0.002787,-0.000754,-0.001501,0.007112,-0.001978,0.001232,-0.00241,0.00467
MH3_LT2,0.087644,0.132019,-0.071276,-0.075905,-0.034468,-0.017849,-0.006345,-0.008077,0.004909,0.000364,0.008119,-0.016335,0.024083,0.003716,-0.000136,0.017634,-0.002086,0.011529,0.007668,0.001376,0.001996,0.003586,-0.002711,0.00012,0.003832
Thanks,
added on 3D viewer
https://vahaduo.github.io/3d/g25/
![[Image: Bahrain01.png]](https://i.postimg.cc/jdxs4t6J/Bahrain01.png)
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03-04-2024, 03:53 PM
(This post was last modified: 03-04-2024, 03:54 PM by Ajeje Brazorf.)
Code: Distance to: BAH_Abu_Saiba_Antiquity:AS_EMT2
0.02838684 Mountain_Jew_Dagestan:GRC11053368
0.02978104 Iranian_Jew:IranianJew1513
0.03064974 Mountain_Jew_Dagestan:GRC11053379
0.03120206 Iraqi:4BA66
0.03159013 Mountain_Jew_Dagestan:GRC11053378
0.03204236 thete_23andMe_scaled
0.03299613 Iraqi:8BA66
0.03299880 Kurdish_Jew:KurdishJew1
0.03332450 Iranian_Jew:IranianJew1409
0.03357443 Assyrian:Assyrian164
Code: Distance to: BAH_Madinat_Hamad_Antiquity:MH2_LT2
0.02458302 Iranian_Fars:IREJ-T064
0.02680252 Iraqi:WIRQARAMUS02
0.02706330 Bukharian_Jew:BukharianJew7
0.02889350 Iraqi:WIRQARAMUS01
0.03031021 eastern_scaled
0.03044493 Bukharian_Jew:BukharianJew8
0.03047369 Bukharian_Jew:BukharianJew3
0.03058193 Iran_Hasanlu_IA_noUDG:I4100_noUDG__BC_961__Cov_88.31%
0.03161393 Iranian_Jew:IranianJew1557
0.03180805 Lebanese_Muslim_Sunni:10AT109
Code: Distance to: BAH_Madinat_Hamad_Antiquity:MH_1LT2
0.02497338 Syria_TellMasaikh_Medieval.SG:R3359.SG__AD_741__Cov_53.42%
0.03294180 Assyrian:Assyrian155
0.03355973 Iraqi:5BA66
0.03360344 Kurdish_Jew:KurdishJew5
0.03366545 EmiratiC:APPG7555896
0.03376520 BAH_Madinat_Hamad_Antiquity:MH2_LT2
0.03403013 Mountain_Jew_Azerbaijan:GRC12118114
0.03425862 Iraqi_Jew:IraqiJew1771
0.03514771 Iranian_Jew:IranianJew1556
0.03522085 Lebanese_Muslim_Sunni:9AT107
Code: Distance to: BAH_Madinat_Hamad_Antiquity:MH_3LT2
0.03407817 Kurdish_Jew:KurdishJew2
0.03484816 Iraqi:Sabian01
0.03569655 Kurdish_Jew:KurdishJew5
0.03572734 Iran_DinkhaTepe_BA_IA_1_noUDG:I3911_noUDG__BC_1500__Cov_84.45%
0.03575735 BAH_Madinat_Hamad_Antiquity:MH_1LT2
0.03628082 Kurdish_Jew:KurdishJew1
0.03676275 Turkey_IA_o6:I14733__BC_451__Cov_61.91%
0.03685650 EmiratiC:APPG7555896
0.03763717 Iran_DinkhaTepe_BA_IA_1_noUDG:I3913_noUDG__BC_1892__Cov_84.76%
0.03783816 Lebanese_Christian_Greek_Orthodox:18TD13
Qrts and Piquerobi like this post
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(03-01-2024, 09:44 PM)Pribislav Wrote: MH1_LT; 432-561 AD; Madinat Hamad, Bahrain; Late Tylos-Sasanian period; J2a2-PF5008>L581>Z37823>PF5000>PF5033>PF4993>Y397526>Y24510>pre-FTA39465 (xFTA41741)
MH3_LT; 577-647 AD; Madinat Hamad, Bahrain; Late Tylos-Sasanian period; H2-P96>Z19008>FT1572>Z41295>Z41284>FT986>Z41289* (xZ41305)
Interesting that none of the two belong to either Haplogroup E or Haplogroup J1 despite coming from the Arabian Peninsula.
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(03-01-2024, 11:56 PM)Tomenable Wrote: (03-01-2024, 11:48 PM)TanTin Wrote: (03-01-2024, 11:37 PM)Tomenable Wrote: I think that paper has data from Qatar, but not from Bahrain?
Yes, mostly Qatar, but there are many others as well. There are more than 800 in total.
Which of these samples are from Bahrain?
The samples are not from Bahrain, but from the region and Norht and East Africa.
These are low coverage samples.
The best quality of these samples are already included in Reich's dataset.
Do you think Bahrain is much more different from other in the region ?
However: many surprises are possible.. It seems this region in Arabian Peninsula was the initial place where huge population started to migrate outside in all directions..
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