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An individual with Sarmatian-related ancestry in Roman Britain
#31
(01-16-2024, 06:07 PM)TanTin Wrote:
(01-16-2024, 05:09 PM)Capsian20 Wrote: Thanks you i was trying to do a this sample G25_K13 but isnt work ( This does not appear to be a valid 23andME DNA file)

Which one did you try? Sarmat01 or Sarmat_QC ?  What type of file format is used by your software? Geno,  23andME or plink (bed,bim, fam) ?

 Sarmat_QC  , i converted bim to txt
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
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#32
(01-16-2024, 06:12 PM)Capsian20 Wrote:  Sarmat_QC  , i converted bim to txt

Try to readjust the settings in .fam file:

Quote:1 data_3.b 0 0 0 1
2 data_4.b 0 0 0 1
3 data_5.b 0 0 0 1

Quote:.fam (PLINK sample information file)
Sample information file accompanying a .bed binary genotype table. (--make-just-fam can be used to update just this file.) Also generated by "--recode lgen" and "--recode rlist".

A text file with no header line, and one line per sample with the following six fields:

Family ID ('FID')
Within-family ID ('IID'; cannot be '0')
Within-family ID of father ('0' if father isn't in dataset)
Within-family ID of mother ('0' if mother isn't in dataset)
Sex code ('1' = male, '2' = female, '0' = unknown)
Phenotype value ('1' = control, '2' = case, '-9'/'0'/non-numeric = missing data if case/control)

Some software may ignore the samples without sex or if other missing info. May be the last column for  Phenotype value .
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#33
(01-16-2024, 06:39 PM)TanTin Wrote:
(01-16-2024, 06:12 PM)Capsian20 Wrote:  Sarmat_QC  , i converted bim to txt

Try to readjust the settings in .fam file:

Quote:1 data_3.b 0 0 0 1
2 data_4.b 0 0 0 1
3 data_5.b 0 0 0 1

Quote:.fam (PLINK sample information file)
Sample information file accompanying a .bed binary genotype table. (--make-just-fam can be used to update just this file.) Also generated by "--recode lgen" and "--recode rlist".

A text file with no header line, and one line per sample with the following six fields:

Family ID ('FID')
Within-family ID ('IID'; cannot be '0')
Within-family ID of father ('0' if father isn't in dataset)
Within-family ID of mother ('0' if mother isn't in dataset)
Sex code ('1' = male, '2' = female, '0' = unknown)
Phenotype value ('1' = control, '2' = case, '-9'/'0'/non-numeric = missing data if case/control)

Some software may ignore the samples without sex or if other missing info. May be the last column for  Phenotype value .

I dont know how i use it but anyway thanks you
TanTin likes this post
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
Reply
#34
Thanks to a discussion with Capsian,  I was able to generate G25 for this Roman Sarmatian.
I am not a big fan of G25, but for those who like to check further:

Quote: Sarmat23-K15-sim_scaled,0.109,0.133,-0.0278,-0.0155,-0.017,0.0067,0.0124,-0.0025,-0.0448,-0.0171,0.004,0.0107,-0.0189,0.001,0.0073,-0.0114,0.0043,-0.0046,-0.0059,0.0168,0.0221,0.0031,-0.0058,-0.0215,-0.0013

Sarmat23-K15-sim_unscaled,0.009576,0.013097,-0.007372,-0.004799,-0.005524,0.002402,0.005276,-0.001083,-0.021905,-0.009383,0.002463,0.00714,-0.012714,0.000727,0.005379,-0.008598,0.003298,-0.003631,-0.004694,0.013434,0.017711,0.002507,-0.004706,-0.017842,-0.001086

Let see if these results make sense .
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#35
Target: C10271_simscaled
Distance: 1.8344% / 0.01834372
41.6 Caucasus_10KYA
27.0 Anatolia_Greece_10KYA
12.4 Steppe_Proto_Yamnaya
8.2 Levant_10KYA
5.2 Western_Europe_10KYA
4.0 Northern_Iran_10KYA
1.4 Central_Europe_10KYA
0.2 Zagros_Mountains_10KYA

Distance to: C10271_simscaled
0.04514368 North_Caucasus:Adygei
0.04678405 East_Anatolia_&_South_Caucasus:Georgian_Khevsurian
0.05179753 North_Caucasus:Ingushian
0.05414742 East_Anatolia_&_South_Caucasus:Abkhasian
0.05436846 East_Anatolia_&_South_Caucasus:Georgian_Kartlian
0.05470067 North_Caucasus:Chechen
0.05568571 East_Anatolia_&_South_Caucasus:Turkish_Meskheti
0.05720963 North_Caucasus:North_Ossetian
0.05736137 East_Anatolia_&_South_Caucasus:Georgian_Kakhetian
0.05763236 North_Caucasus:Balkar
0.05821834 North_Caucasus:Circassian
0.05911269 North_Caucasus:Cherkes
0.06027309 North_Caucasus:Kabardin
0.06059709 North_Caucasus:Karachay
0.06063722 North_Caucasus:Kumyk
0.06150901 East_Anatolia_&_South_Caucasus:Georgian_Imeretian
0.06315348 East_Anatolia_&_South_Caucasus:Georgian_Adjarian
0.06318046 North_Caucasus:Azeri_Dagestan
0.06340318 East_Anatolia_&_South_Caucasus:Turkish_East_Erzurum
0.06509983 North_Caucasus:Abazin
0.06541147 East_Anatolia_&_South_Caucasus:Turkish_East_Gumushane
0.06947513 East_Anatolia_&_South_Caucasus:Armenian_Syunik
0.07059902 East_Anatolia_&_South_Caucasus:Armenian_Hemsheni
0.07072733 East_Anatolia_&_South_Caucasus:Turkish_Rize
0.07073563 North_Caucasus:Kaitag
TanTin likes this post
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
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