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TheYtree
#1
Hello everybody guys
I would ask about what do you think about TheYtree Y-DNA and mtDNA version Chinese
Thanks
lg16 likes this post
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
Reply
#2
I've uploaded there a couple of y bams and very content - they are fast, scrupulous and free
ronin92 and Capsian20 like this post
K36 52%Kivutkalns153, K13 25% North Atlantic, 45% Baltic, MTA 20% Svear
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#3
(04-21-2024, 09:14 PM)Geo Wrote: I've uploaded there a couple of y bams and very content - they are fast, scrupulous and free

Even in SNPs ?
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
Reply
#4
I've uploaded bam to them once and they processed it fast.

They are more flexible than Yfull. I recovered and contributed FASTA sequences from Chinese Pangenome Consortium files and they handled those without fuss. YFull does not accept this format.
Capsian20 likes this post
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#5
Yes, they are helpful guys.

However, they put bams with even lower than 1% coverage. They also use older copy of Yfull tree so have much lower experience when it comes to determining age of clades.

They are not restricted though when it comes to ancient genomes, so its more helpful in analysing various DNA papers.
Capsian20 likes this post
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#6
(04-21-2024, 09:20 PM)Capsian20 Wrote:
(04-21-2024, 09:14 PM)Geo Wrote: I've uploaded there a couple of y bams and very content - they are fast, scrupulous and free

Even in SNPs ?

They detected private SNPs in new sample and cope as good as yfull in all known SNPs. 
Though they don't make strs as yfull but I don't need them
ronin92 and Capsian20 like this post
K36 52%Kivutkalns153, K13 25% North Atlantic, 45% Baltic, MTA 20% Svear
Reply
#7
(04-22-2024, 01:26 PM)Geo Wrote:
(04-21-2024, 09:20 PM)Capsian20 Wrote:
(04-21-2024, 09:14 PM)Geo Wrote: I've uploaded there a couple of y bams and very content - they are fast, scrupulous and free

Even in SNPs ?

They detected private SNPs in new sample and cope as good as yfull in all known SNPs. 
Though they don't make strs as yfull but I don't need them

I got a lot SNPs in TheYtree but i dont have info about qual and reads this SNP
this picture compared btw my SNPs in Yfull and TheYtree
   
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
Reply
#8
(04-22-2024, 07:52 AM)sirdan Wrote: Yes, they are helpful guys.

However, they put bams with even lower than 1% coverage. They also use older copy of Yfull tree so have much lower experience when it comes to determining age of clades.

They are not restricted though when it comes to ancient genomes, so its more helpful in analysing various DNA papers.

Yes but sometimes there false in Y Hg sample especially a sample ancient but anyway they are doing good work
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
Reply
#9
I was checking in SNPs private TheYtree in YFull i dond find SNP like this SNP TY488767 (Error: SNP "TY488767" is not in the database ) 
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
Reply
#10
(04-22-2024, 08:41 PM)Capsian20 Wrote: I was checking in SNPs private TheYtree in YFull i dond find SNP like this SNP TY488767 (Error: SNP "TY488767" is not in the database ) 

The same situation
They have found tyt173932/mf20529, tyt139867/mf77127, ty474006 and 1 unnamed SNP 
I think their findings rarely taken into account by yfull and ftdna and listed in their databases.
(Mf means mofang23, C means dnachron)
Capsian20 likes this post
K36 52%Kivutkalns153, K13 25% North Atlantic, 45% Baltic, MTA 20% Svear
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