04-27-2024, 10:55 AM
(This post was last modified: 04-27-2024, 11:03 AM by Mulay 'Abdullah.)
(04-21-2024, 02:17 AM)Mulay 'Abdullah Wrote: I hope I could get some answers to my questions for the Germany Lech MBA sample.
Apart from that, with a more substantial datasheet than the official one, with datation and DNA coverage of the samples, some results with ancient individuals, link of the datasheet, thanks to @Ajeje :
https://www.dropbox.com/scl/fi/0q39lrsyn...o&e=4&dl=0
Code:Distance: 0.6666% / 0.00666551 | ADC: 0.25x RC
18.0 Germany_Lech_MBA
16.4 Portugal_MonteDaNora_LateRoman.SG
11.0 CanaryIslands_Guanche
10.2 Spain_Islamic
8.0 Croatia_MBA
7.4 England_EastYorkshire_MIA_LIA_low_res
7.4 England_EIA
6.4 England_Blackdeath_Post-Later_Medieval
5.4 Germany_Ellwangen_Plague_EarlyModern
4.0 England_EIA_low_res
2.4 Hungary_Balatonszemes_EMA
1.6 Spain_Roman_oMixed
1.2 USA_MD_Catoctin_Furnace_Africa
0.6 Germany_MA_Erfurt2
Distance: 0.0123% / 0.01228131 | R2P
54.9 Spain_Visigoth_Granada
45.1 England_EIA
Distance: 0.8027% / 0.00802737 | R3P
56.4 England_Blackdeath_Later_Medieval
24.8 CanaryIslands_Guanche
18.8 Romania_Boian_LN
Distance: 0.6086% / 0.00608597 | R4P
51.6 Faroes_EM
22.0 CanaryIslands_Guanche
18.2 Switzerland_LN
8.2 Turkey_Ikiztepe_LC
Distance: 0.4879% / 0.00487912 | R5P
49.8 Faroes_EM
21.4 CanaryIslands_Guanche
10.6 Romania_Boian_LN
10.0 Spain_C
8.2 Turkey_Ikiztepe_LC
Code:Distance to:
0.03377635 Spain_Islamic:I12514__AD_1096__Cov_43.70%
0.03450635 Spain_Medieval:I10895__AD_912__Cov_53.79%
0.03495705 Portugal_Miroico_LateRoman.SG:R10500.SG__AD_425__Cov_50.99%
0.03518741 Portugal_MonteDaNora_LateRoman.SG:R10494.SG__AD_772__Cov_84.49%
0.03668957 Portugal_Miroico_LateRoman.SG:R10502.SG__AD_425__Cov_69.69%
0.03710568 Portugal_Miroico_LateRoman.SG:R10501.SG__AD_425__Cov_61.96%
0.03827361 Spain_Roman_oMixed:I10866__AD_3__Cov_69.41%
0.03882182 Spain_Islamic_Zira:I7498__AD_1050__Cov_63.60%
0.03915900 Spain_Islamic:I12515__AD_1200__Cov_50.03%
0.04092333 Mexico_Colonial_European:I8558__AD_1610__Cov_71.83%
With chebyshev:
Code:Target:
Chebyshev distance: 0.4010% / 0.00400985 | ADC: 0.25x RC
17.2 Germany_Lech_MBA
17.2 Spain_Islamic
16.0 Portugal_Miroico_LateRoman.SG
9.2 Spain_Roman_oMixed
8.6 Spain_Visigoth_Granada
5.0 Croatia_Gornji
4.4 Denmark_Sealand_VA
4.4 Portugal_MonteDaNora_LateRoman.SG
4.0 Serbia_TimacumKuline
2.6 France_Le_Piage_Solutrean
2.4 Germany_AltInden_Saxon_EMedieval
2.4 Germany_MA_Erfurt2
1.6 Sudan_MA_Kulubnarti
1.2 Italy_Torino_EMA
1.0 USA_MD_Catoctin_Furnace_Africa
0.8 Portugal_Conimbriga_Roman.SG
0.6 Spain_Islamic_Zira
0.4 Bulgaria_MalakPreslavets_N
0.4 Poland_Niemcza_MA_oBalkans
0.2 Germany_SouthernGermany_Singen_IA
0.2 Hungary_IA_Scythian.SG
0.2 Spain_Navarra_EIA
Chebyshev distance: 0.2867% / 0.00286742 | R3P
54.0 Faroes_EM
23.6 Romania_Boian_LN
22.4 CanaryIslands_Guanche
Chebyshev distance: 0.2430% / 0.00243024 | R4P
39.4 England_MIA
21.0 CanaryIslands_Guanche
21.0 England_Blackdeath_Post-Later_Medieval
18.6 Romania_Boian_LN
Chebyshev distance: 0.2229% / 0.00222888 | R5P
44.8 Faroes_EM
22.2 CanaryIslands_Guanche
17.8 Greece_Crete_EMBA
8.0 Scotland_N_lowEEF
7.2 Hungary_Füzesabony_MBA
Edit: Well, i got a better fit for 5RP with chebyshev
Chebyshev distance: 0.2187% / 0.00218732 | R5P
30.6 Faroes_EM
20.6 England_Blackdeath_Post-Later_Medieval
18.2 CanaryIslands_Guanche
15.6 Romania_Gumelnița_En
15.0 Spain_Visigoth_Granada
Code:Chebyshev dist:
0.01431300 Spain_Visigoth_Granada:I3585__AD_755__Cov_62.70%
0.01479700 Portugal_Miroico_LateRoman.SG:R10501.SG__AD_425__Cov_61.96%
0.01479700 Portugal_Miroico_LateRoman.SG:R10502.SG__AD_425__Cov_69.69%
0.01679000 Spain_Islamic:I12514__AD_1096__Cov_43.70%
0.01707300 Portugal_Miroico_LateRoman.SG:R10500.SG__AD_425__Cov_50.99%
0.01711900 Spain_Islamic:I12515__AD_1200__Cov_50.03%
0.01747800 Spain_Roman_oMixed:I10866__AD_3__Cov_69.41%
0.01747800 Portugal_Miroico_LateRoman.SG:R10507.SG__AD_425__Cov_48.16%
0.01799300 Portugal_Miroico_LateRoman.SG:R10506.SG__AD_425__Cov_75.60%
0.01810200 Spain_Islamic_Zira:I7498__AD_1050__Cov_63.60%
I can't to have 2 Way results because the datasheet is very huge and it crashes even with this link, with this tool:
https://output.jsbin.com/gojecoh
How to do? do you have an alternative solution? I also thought about the G25 studio software from DNA Genics that I had bought before with the mixed mode 2 populations, but it crashes
For comparison, with official ancient individuals:
Code:
Distance: 0.9253% / 0.00925308 | ADC: 0.25x RC
20.8 Spain_Visigoth_Granada
17.0 England_EIA
16.2 Spain_Islamic
11.8 France_GrandEst_IA2
11.6 Portugal_MonteDaNora_LateRoman.SG
8.6 Germany_Lech_MBA
6.8 England_Saxon_oAfrica.SG
5.6 Slovakia_LIA_LaTene
1.4 Russia_Viking.SG
0.2 Sweden_Viking.SG
Distance: 0.0123% / 0.01228131 | R2P
41.8 England_EIA:I16600
32.3 Spain_Visigoth_Granada:I3576
22.6 Spain_Visigoth_Granada:I3575
2.1 England_EIA:I19287
0.6 England_EIA:I12783
0.4 England_EIA:I14747
0.2 England_EIA:I16612
Distance: 0.9428% / 0.00942756 | R3P
48.4 Sweden_Viking.SG
32.0 Italy_Tuscany_Grosseto_Etruscan
19.6 CanaryIslands_Guanche.SG
Distance: 0.6827% / 0.00682655 | R4P
32.4 England_EIA
28.2 Poland_Weklice_WielbarkCulture_Roman.SG
20.0 CanaryIslands_Guanche.SG
19.4 Germany_EN_LBK
Distance: 0.5213% / 0.00521314 | R5P
33.2 Poland_Weklice_WielbarkCulture_Roman.SG
19.8 CanaryIslands_Guanche.SG
19.8 England_EIA
15.8 Scotland_N_mediumlowEEF
11.4 Turkey_Ikiztepe_LateC
Code:
0.03377635 Spain_Islamic:I12514
0.03450635 Spain_Medieval:I10895
0.03495705 Portugal_Miroico_LateRoman.SG:R10500.SG
0.03518741 Portugal_MonteDaNora_LateRoman.SG:R10494.SG
0.03668957 Portugal_Miroico_LateRoman.SG:R10502.SG
0.03710568 Portugal_Miroico_LateRoman.SG:R10501.SG
0.03827361 Spain_Roman_oMixed:I10866
0.03882182 Spain_Islamic_Zira:I7498
0.03915900 Spain_Islamic:I12515
0.04092333 Mexico_Colonial_European:I8558
Chebyshev:
Code:
Chebyshev distance: 0.4413% / 0.00441318 | ADC: 0.25x RC
19.0 Germany_Lech_MBA
14.4 Portugal_Miroico_LateRoman.SG
13.6 Spain_Islamic
10.2 Spain_Visigoth_Granada
9.0 Spain_Roman_oMixed
7.0 Germany_EMedieval_Alemanic_SEurope
5.6 Macedonia_Medieval
5.0 England_MIA_LIA
3.8 Portugal_MonteDaNora_LateRoman.SG
2.6 Hungary_Conqueror_Commoner
2.4 Spain_Islamic_Almohade
2.2 Spain_Islamic_Zira
2.0 Czech_EBA_Unetice
1.2 Sudan_EarlyChristian_S
1.0 Botswana_Xaro_EIA
0.8 Hungary_Conqueror_Elite
0.2 Hungary_MidAvar
Chebyshev distance: 0.3675% / 0.00367493 | R3P
63.0 Denmark_Viking.SG
19.4 CanaryIslands_Guanche.SG
17.6 Germany_EN_LBK
Chebyshev distance: 0.2841% / 0.00284100 | R4P
50.4 England_Saxon.SG
19.0 CanaryIslands_Guanche.SG
18.0 Bulgaria_EIA
12.6 Ireland_MN.SG
Chebyshev distance: 0.2230% / 0.00223031 | R5P
32.2 England_EIA
20.4 Spain_Visigoth_Granada
20.2 Poland_Weklice_WielbarkCulture_Roman.SG
13.6 CanaryIslands_Guanche.SG
13.6 Romania_C_Bodrogkeresztur
Code:
Chebyshev dist:
0.01431300 Spain_Visigoth_Granada:I3585
0.01479700 Portugal_Miroico_LateRoman.SG:R10501.SG
0.01479700 Portugal_Miroico_LateRoman.SG:R10502.SG
0.01679000 Spain_Islamic:I12514
0.01707300 Portugal_Miroico_LateRoman.SG:R10500.SG
0.01711900 Spain_Islamic:I12515
0.01747800 Portugal_Miroico_LateRoman.SG:R10507.SG
0.01747800 Spain_Roman_oMixed:I10866
0.01799300 Portugal_Miroico_LateRoman.SG:R10506.SG
0.01810200 Spain_Islamic_Zira:I7498
2 WAY:
26.6 million models (164.5 s):
0.01540 scaled = 66% England_EIA:I16600 + 34% Italy_Imperial_oAfrica.SG:R132.SG
0.01604 scaled = 64% England_EIA:I16600 + 36% Tunisia_Punic_oAfrica2.SG:R11778.SG
0.01612 scaled = 77% Sweden_Viking.SG:VK350_noUDG.SG + 23% Austria_Ovilava_Roman_oAfrica.SG:R10667.SG
0.01662 scaled = 77% Italy_North_EarlyMedieval_Langobards_2:CL63 + 23% Spain_BellBeaker_oAfrica:I4246
0.01678 scaled = 55% Spain_Visigoth_Granada:I3576 + 45% England_EIA:I16600
0.01695 scaled = 64% Germany_AltInden_Saxon_EMedieval:IND002.A_noUDG + 36% Tunisia_Punic_oAfrica2.SG:R11778.SG
0.01719 scaled = 77% Czech_IA_LaTene:I17143 + 23% CanaryIslands_Guanche.SG:gun011_noUDG.SG
0.01737 scaled = 80% Sweden_Viking.SG:VK350_noUDG.SG + 20% Spain_BellBeaker_oAfrica:I4246
0.01770 scaled = 81% Sweden_Viking.SG:VK350_noUDG.SG + 19% CanaryIslands_Guanche.SG:gun012_noUDG.SG
0.01785 scaled = 60% England_MIA_LIA:I19854 + 40% Tunisia_Punic_oAfrica2.SG:R11778.SG
يَا أَيُّهَا النَّاسُ إِنَّا خَلَقْنَاكُم مِّن ذَكَرٍ وَأُنثَىٰ وَجَعَلْنَاكُمْ شُعُوبًا وَقَبَائِلَ لِتَعَارَفُوا ۚ إِنَّ أَكْرَمَكُمْ عِندَ اللَّهِ أَتْقَاكُمْ ۚ إِنَّ اللَّهَ عَلِيمٌ خَبِيرٌ
S.49:13
يَٰٓأَيُّهَا ٱلنَّاسُ إِنَّا خَلَقْنَٰكُم مِّن ذَكَرٍ وَأُنثَىٰ وَجَعَلْنَٰكُمْ شُعُوبًا وَقَبَآئِلَ لِتَعَارَفُوٓا۟ إِنَّ أَكْرَمَكُمْ عِندَ ٱللَّهِ أَتْقَىٰكُمْ إِنَّ ٱللَّهَ عَلِيمٌ خَبِيرٌ S.49:13
Code:
Unscaled
0.01794617 Spain_Roman_oMixed
0.01889478 Portugal_MonteDaNora_LateRoman
0.01890273 Austria_Ovilava_Roman