Allentoft Population Genomics of Late Stone Age West Eurasia

[TanTin]

For those who want to have fun studying PCA ( the last batch of NEO samples is in bold blue, modern populations in dark pink, BS drift as bubble' sizes, etc):

Interesting..  I see  NEO281 is like Kotias KK1 .

[ph2ter]

For those who want to have fun studying PCA ( the last batch of NEO samples is in bold blue, modern populations in dark pink, BS drift as bubble' sizes, etc):

Interesting..  I see  NEO281 is like Kotias KK1 .

Yes, with slightly more ancestry from Iran.

Late Neolithic similarity map:

[AimSmall]

Using Norfern-Ostrobothnian's version (many thanks)...

[Pribislav]

NEO261; 2112-1778 BC; Sillvik, Sweden; LNBA; I1a-DF29>Z2893 (Z63,Z58,FGC15556,A5741,Y14628,Y11204,FTB21048,PH790,BY169148)


NEO93; 1886-1689 BC; Stroby Ladeplands, Denmark; Bronze Age; I1a2a1-Z58 (xZ138,CTS8647,Z2041,A12798,Y128537,A22488)

[PopGenist82]

NEO261; 2112-1778 BC; Sillvik, Sweden; LNBA; I1a-DF29>Z2893 (Z63,Z58,FGC15556,A5741,Y14628,Y11204,FTB21048,PH790,BY169148)


NEO93; 1886-1689 BC; Stroby Ladeplands, Denmark; Bronze Age; I1a2a1-Z58 (xZ138,CTS8647,Z2041,A12798,Y128537,A22488)

Can you please look at  NEO83 if its yet available ?

[AimSmall]

NEO261; 2112-1778 BC; Sillvik, Sweden; LNBA; I1a-DF29>Z2893 (Z63,Z58,FGC15556,A5741,Y14628,Y11204,FTB21048,PH790,BY169148)


NEO93; 1886-1689 BC; Stroby Ladeplands, Denmark; Bronze Age; I1a2a1-Z58 (xZ138,CTS8647,Z2041,A12798,Y128537,A22488)

Can you please look at  NEO83 if its yet available ?

The files are there if that's the question.

[PopGenist82]

NEO261; 2112-1778 BC; Sillvik, Sweden; LNBA; I1a-DF29>Z2893 (Z63,Z58,FGC15556,A5741,Y14628,Y11204,FTB21048,PH790,BY169148)


NEO93; 1886-1689 BC; Stroby Ladeplands, Denmark; Bronze Age; I1a2a1-Z58 (xZ138,CTS8647,Z2041,A12798,Y128537,A22488)

Can you please look at  NEO83 if its yet available ?

The files are there if that's the question.

Great. The follow-up is if anyone can have a look at the sub-clades below 'R1b'

[AimSmall]

Here is Snipsa's analysis of it...

Russia_Borovyanka_EN:NEO83

Result (67.7% 453 -7 +185): R-M478 
R1b -> R-L754 -> R-L389 -> R-P297 -> R-Y13200 -> R-Y13202 -> R-Y13204 -> R-M478 (ISOGG: R1b1a1a1)
Extra: Z39886:A Z31464:T Z20572:T Y36343:A A2593/YP2465/V4272:T FGC9462/Y13505:T ZS5833:T L339:T F879:A CTS707/M2306:T Y7205:T FGC25426:A FGC24342:C BY15859:T Y83448:T FGC22775:T Z381/S263(H):T Z36059:A Z34118:T CTS1282:T Y18608:T CTS1433:T FTA2168/Z35900:T YP5907:T A7108:T Y20135:T YP5515:T Y2986/FGC4872:A Y85396:T GG269:A Z44937/Y36892/FGC67736:T PF2871/M3257:A Y14160:T A16438:T Z2948/V1632:T Y2915/FGC10176:T Y11954/FGC24007:A Y22529:T BY199822:A Y4764:T Y8549:T F1266:T F1295:T YP6031:A GG271:A Y14169:G Y14170:A Y3352/FGC12664:T Y32920/Z44229:T BY53833:A Y19696/BY856/GG490:T Z3986:T PF327/M11757/Z40390:A Z30508:A ZS2379:A Y139434:T Z22047:T M6385:T Y13954:A Y10620/Z30640:T Z27150:T YP1439:T Y2257:T PF3902:T YP4588:A L514:T PH1443:A Z42566:A CTS3337/PF1653:T Y4664/FGC7189:A FGC34077:A CTS3440/F3925:A FGC26392/YP2942:A Y31005/Z39090:A Y5932/V2881/FGC18754:A YP1675:T FGC35403:A YP1056:T BY14582:A Y4242:T FGC6774:A Z2320/PF4854/YSC0000183:T FGC26568/YP3035:A Z13917:T MF6584:A CTS5145/Z880:A Y4707:T Y14538:T Y95744:A Z1444/F2111:T Z19176/F5039:A YP1294:T BY21304/Z45021:T F348:T Y16548:T CTS5961:A CTS5970/M2206:A Y24472:A BY109249:T Y33763:T Y7172/FGC18600:T BY6026:T M2894:A Z43183:T Y4248:T BY32202:T F3784:T Y33222:T CTS7328/S4742:T BY21345:A FGC26873:T V6707/S2167:T Z31255:T Z30514:T Y11997/Z30622/F12267:C Y30747:T Y33850:T Z13559:A CTS8026/M3850:T F3790:A FGC26973/YP3259:A Y10644/FGC21457:T Z16288:T YP6052:A Y18429:G YP4825:T CTS9353:T FGC24090:A MF730695/L1136/V3596:G YP1303:T Y6352:T Y12911/A2423:T F2995:T FGC6979:T FGC27276/YP3433/V4134:T A2885:A Y16417:A FGC64043:A YP209/FGC8106:T YP4242:T Z17795:T Y32356:T Y14526/ZS6049:A Z35337:A M8875/Z11857:A Y23319:T Y7919:T YP1264:A M178:T Y27551:A Z4329/M3035:T FGC17470:A BY8304:T PF5573:T Z622:A Y30841:T PF3076/M3604/S7530:T Z14156:A Y20488:T Z16810/Y11969:A ZS4442:T FGC27747/ZS4443/YP3636:T FGC19131:T CTS11312:A Y1262:T FGC66342:T Z12962:A Y10283/Z11879:T FGC12504/YFS097317:A M3422:A Z2879/CTS11838:T Y31177:T GG309:T Y3988/FGC14871:A Y761/M1177:T ZS3486:A F26193:T Z31170:A Z13189:A Y7822:T FGC5206:A Y22936:A Y19883:T Z29093:T PF3434:T
Links:
https://www.yfull.com/tree/R-M478/
https://phylogeographer.com/scripts/heat...kup=R-M478
http://scaledinnovation.com/gg/snpTracke...snp=R-M478


For grins... here is the mtDNA Haplogroup

Result ( 76.6% 53 -2 +11): U4a2g
Extra: T310TC A2792G C4394T G4769A G4789A C7628T C8375T C8595T G9182A C9431T T11353C

[Capsian20]

Here is Snipsa's analysis of it...

Russia_Borovyanka_EN:NEO83

Result (67.7% 453 -7 +185): R-M478 
R1b -> R-L754 -> R-L389 -> R-P297 -> R-Y13200 -> R-Y13202 -> R-Y13204 -> R-M478 (ISOGG: R1b1a1a1)
Extra: Z39886:A Z31464:T Z20572:T Y36343:A A2593/YP2465/V4272:T FGC9462/Y13505:T ZS5833:T L339:T F879:A CTS707/M2306:T Y7205:T FGC25426:A FGC24342:C BY15859:T Y83448:T FGC22775:T Z381/S263(H):T Z36059:A Z34118:T CTS1282:T Y18608:T CTS1433:T FTA2168/Z35900:T YP5907:T A7108:T Y20135:T YP5515:T Y2986/FGC4872:A Y85396:T GG269:A Z44937/Y36892/FGC67736:T PF2871/M3257:A Y14160:T A16438:T Z2948/V1632:T Y2915/FGC10176:T Y11954/FGC24007:A Y22529:T BY199822:A Y4764:T Y8549:T F1266:T F1295:T YP6031:A GG271:A Y14169:G Y14170:A Y3352/FGC12664:T Y32920/Z44229:T BY53833:A Y19696/BY856/GG490:T Z3986:T PF327/M11757/Z40390:A Z30508:A ZS2379:A Y139434:T Z22047:T M6385:T Y13954:A Y10620/Z30640:T Z27150:T YP1439:T Y2257:T PF3902:T YP4588:A L514:T PH1443:A Z42566:A CTS3337/PF1653:T Y4664/FGC7189:A FGC34077:A CTS3440/F3925:A FGC26392/YP2942:A Y31005/Z39090:A Y5932/V2881/FGC18754:A YP1675:T FGC35403:A YP1056:T BY14582:A Y4242:T FGC6774:A Z2320/PF4854/YSC0000183:T FGC26568/YP3035:A Z13917:T MF6584:A CTS5145/Z880:A Y4707:T Y14538:T Y95744:A Z1444/F2111:T Z19176/F5039:A YP1294:T BY21304/Z45021:T F348:T Y16548:T CTS5961:A CTS5970/M2206:A Y24472:A BY109249:T Y33763:T Y7172/FGC18600:T BY6026:T M2894:A Z43183:T Y4248:T BY32202:T F3784:T Y33222:T CTS7328/S4742:T BY21345:A FGC26873:T V6707/S2167:T Z31255:T Z30514:T Y11997/Z30622/F12267:C Y30747:T Y33850:T Z13559:A CTS8026/M3850:T F3790:A FGC26973/YP3259:A Y10644/FGC21457:T Z16288:T YP6052:A Y18429:G YP4825:T CTS9353:T FGC24090:A MF730695/L1136/V3596:G YP1303:T Y6352:T Y12911/A2423:T F2995:T FGC6979:T FGC27276/YP3433/V4134:T A2885:A Y16417:A FGC64043:A YP209/FGC8106:T YP4242:T Z17795:T Y32356:T Y14526/ZS6049:A Z35337:A M8875/Z11857:A Y23319:T Y7919:T YP1264:A M178:T Y27551:A Z4329/M3035:T FGC17470:A BY8304:T PF5573:T Z622:A Y30841:T PF3076/M3604/S7530:T Z14156:A Y20488:T Z16810/Y11969:A ZS4442:T FGC27747/ZS4443/YP3636:T FGC19131:T CTS11312:A Y1262:T FGC66342:T Z12962:A Y10283/Z11879:T FGC12504/YFS097317:A M3422:A Z2879/CTS11838:T Y31177:T GG309:T Y3988/FGC14871:A Y761/M1177:T ZS3486:A F26193:T Z31170:A Z13189:A Y7822:T FGC5206:A Y22936:A Y19883:T Z29093:T PF3434:T
Links:
https://www.yfull.com/tree/R-M478/
https://phylogeographer.com/scripts/heat...kup=R-M478
http://scaledinnovation.com/gg/snpTracke...snp=R-M478


For grins... here is the mtDNA Haplogroup

Result ( 76.6% 53 -2 +11): U4a2g 
Extra: T310TC A2792G C4394T G4769A G4789A C7628T C8375T C8595T G9182A C9431T T11353C

This subclade R-M73 is very interesting , there sample belong in this subclade from Tunis, maybe his cluster is South European ?

[RCO]

For those who want to have fun studying PCA ( the last batch of NEO samples is in bold blue, modern populations in dark pink, BS drift as bubble' sizes, etc):

Interesting..  I see  NEO281 is like Kotias KK1 .

Yes, with slightly more ancestry from Iran.

Late Neolithic similarity map:

That's the map of the Ancient Iranian Proto-Indo-European population. More Ancient samples will fill and connect the map around the Caspian Sea.

[crashdoc]

The last two are now available on https://www.ebi.ac.uk/ena/browser/view/PRJEB64656

NEO812 & NEO911

[crashdoc]

Code:

France_EN:NEO812,0.144555,0.166547,0.065619,-0.040375,0.081246,-0.023706,-0.005875,-0.000692,0.056449,0.09859,0.002761,0.021431,-0.040882,-0.028626,-0.014115,0.005436,0.016037,0.004054,0.000628,-0.006628,0.003743,-0.000989,-0.013927,-0.032896,-0.003113

Russia_Vengerovo_N:NEO911,0.083091,-0.160454,0.093149,0.137276,-0.08617,0.021475,-0.040422,-0.046383,-0.023725,-0.055035,0.031503,-0.003297,0.016799,-0.05849,0.016422,0.007558,-0.010822,0.003294,0.004022,0.002251,-0.038807,0.012736,0.01898,0.00482,-0.007065

NEO812: Grotte du Gazel, France, BC 4595, 1st degree relative (daughter) of NEO813
NEO911: Vengerovo-2, Russia, BC 4830

[Angantyr]

As posted in the general threads:

The latest version of preprint has a new title, Population Genomics of Postglacial Western Eurasia: https://www.biorxiv.org/content/10.1101/...4.490594v6

The Denmark focused parts appear to have been moved to a separate article, 100 ancient genomes show repeated population turnovers in Neolithic Denmark, according to this TwitterX post: https://twitter.com/nrken19/status/1731680013928267983

[Anthrofennica]

@Pribislav - Could you look at NEO876? "R1a" is not very detailed. It is a very early bog body and R1a was not again found in Jutland samples from this paper.

[Kale]

It was not mentioned in the relatedness section of the supplementary information, but NEO77 and NEO80 are close genealogical relatives.
Their time periods overlap and they were buried 54 miles apart.

NEO77 = Okunevo 5 and 7 - SW Siberia 2896-2668BC - 56.438 N 74.907 E
NEO80 = Borovjanka XVII - SW Siberia 3016-2668BC - 55.733 N 74.285 E