Posts: 159
Threads: 1
Joined: Oct 2023
Variable kinship patterns in Neolithic Anatolia revealed by ancient genomes: https://www.sciencedirect.com/science/ar...2221004231
Quote:Scaled
neolithic_anatolia:Ash128,0.105855,0.169593,-0.001886,-0.076874,0.03693,-0.036814,-0.00235,-0.003,0.020452,0.064694,0.002436,0.01169,-0.027651,-0.002477,-0.030944,-0.004773,0.035986,0.00228,0.007039,-0.000375,-0.009483,0.007419,-0.007272,-0.008314,-0.003712
neolithic_anatolia:Ash129,0.113823,0.162485,0.003017,-0.073321,0.041238,-0.039881,-0.003055,0.000692,0.021066,0.069979,0.005359,0.009591,-0.025272,-0.00055,-0.039766,-0.003978,0.036638,0.003167,0.010307,-0.007128,-0.010606,0.001855,0.000493,-0.00964,-0.005508
neolithic_anatolia:Ash133,0.108132,0.162485,0.00792,-0.073967,0.042469,-0.037929,-0.002115,-0.003923,0.026793,0.068339,0.01023,0.016935,-0.025867,0.002477,-0.033659,-0.012596,0.032726,0.001394,0.012696,-0.002126,-0.002745,0.006677,-0.006409,-0.001687,-0.006586
neolithic_anatolia:CCH294,0.092197,0.169593,-0.010559,-0.111759,0.036314,-0.060519,-0.00282,-0.013153,0.024338,0.061778,0.024358,0.006294,-0.012636,-0.010597,-0.033116,-0.017634,0.017471,0.006588,0.007542,0.002126,-0.010981,0.007419,-0.006039,-0.001807,-0.004071
neolithic_anatolia:CCH311,0.111547,0.171624,-0.011691,-0.12048,0.032929,-0.055499,-0.004935,-0.002077,0.020657,0.063418,0.002273,0.010191,-0.022448,0.004679,-0.022258,-0.026651,-0.022296,0.004054,0.013324,-0.000625,-0.012728,0.002102,-0.003821,-0.000964,0.001557
neolithic_anatolia:cth739,0.094473,0.155376,-0.020365,-0.106268,0.028928,-0.053826,-0.00752,0.000692,0.023929,0.065605,0.011367,0.004046,-0.02438,0.009221,-0.034337,-0.024396,0.009127,-0.011149,0.016718,-0.012131,-0.012603,0.018795,-0.006779,0.003856,-0.014609
Raw
neolithic_anatolia:Ash128,0.0093,0.0167,-0.0005,-0.0238,0.012,-0.0132,-0.001,-0.0013,0.01,0.0355,0.0015,0.0078,-0.0186,-0.0018,-0.0228,-0.0036,0.0276,0.0018,0.0056,-0.0003,-0.0076,0.006,-0.0059,-0.0069,-0.0031
neolithic_anatolia:Ash129,0.01,0.016,0.0008,-0.0227,0.0134,-0.0143,-0.0013,0.0003,0.0103,0.0384,0.0033,0.0064,-0.017,-0.0004,-0.0293,-0.003,0.0281,0.0025,0.0082,-0.0057,-0.0085,0.0015,0.0004,-0.008,-0.0046
neolithic_anatolia:Ash133,0.0095,0.016,0.0021,-0.0229,0.0138,-0.0136,-0.0009,-0.0017,0.0131,0.0375,0.0063,0.0113,-0.0174,0.0018,-0.0248,-0.0095,0.0251,0.0011,0.0101,-0.0017,-0.0022,0.0054,-0.0052,-0.0014,-0.0055
neolithic_anatolia:CCH294,0.0081,0.0167,-0.0028,-0.0346,0.0118,-0.0217,-0.0012,-0.0057,0.0119,0.0339,0.015,0.0042,-0.0085,-0.0077,-0.0244,-0.0133,0.0134,0.0052,0.006,0.0017,-0.0088,0.006,-0.0049,-0.0015,-0.0034
neolithic_anatolia:CCH311,0.0098,0.0169,-0.0031,-0.0373,0.0107,-0.0199,-0.0021,-0.0009,0.0101,0.0348,0.0014,0.0068,-0.0151,0.0034,-0.0164,-0.0201,-0.0171,0.0032,0.0106,-0.0005,-0.0102,0.0017,-0.0031,-0.0008,0.0013
neolithic_anatolia:cth739,0.0083,0.0153,-0.0054,-0.0329,0.0094,-0.0193,-0.0032,0.0003,0.0117,0.036,0.007,0.0027,-0.0164,0.0067,-0.0253,-0.0184,0.007,-0.0088,0.0133,-0.0097,-0.0101,0.0152,-0.0055,0.0032,-0.0122
Posts: 491
Threads: 6
Joined: Sep 2023
Gender: Male
Ethnicity: Kaikavian Croatian
Nationality: Croatian
Y-DNA (P): I2-A815-FGC92673-Y246976
mtDNA (M): HV0-T195C!-a24
(04-07-2024, 04:59 AM)ilabv Wrote: (03-17-2024, 12:12 PM)pelop Wrote: (03-16-2024, 10:30 PM)ilabv Wrote: There have been many papers without G25 coordinates (recently and perhaps older ones too).
If you know of any studies which dont have G25 coordinates please send me their raw data or at least the study they come from. Teepean has been helping me so I can help the community gong forward
https://www.sciencedirect.com/science/ar...4223022927
https://www.sciencedirect.com/science/ar...4223011112
Bioarchaeological analyses reveal long-lasting continuity at the periphery of the Late Antique Roman Empire: https://www.sciencedirect.com/science/ar...4223011112
Code: Scaled
switzerland:Grave_1,0.121791,0.149283,0.071653,0.053618,0.052625,0.034025,-0.007285,0.006231,-0.0045,0.002551,-0.00747,0.00045,-0.015758,-0.022432,0.028773,0.025722,0.01343,-0.005701,0.001885,0.008004,-0.001248,0.01051,0.010969,0.01458,0.01449
switzerland:Grave_9,0.127482,0.13405,0.067127,0.051357,0.050471,0.022869,0.00611,0.01223,-0.009817,-0.003827,-0.003735,0.009442,-0.00446,-0.015001,0.019815,0.027579,0.014473,0.007221,0.010433,0.008754,0.007861,0.000742,0.002218,0.014701,-0.00455
Raw
switzerland:Grave_1,0.0107,0.0147,0.019,0.0166,0.0171,0.0122,-0.0031,0.0027,-0.0022,0.0014,-0.0046,0.0003,-0.0106,-0.0163,0.0212,0.0194,0.0103,-0.0045,0.0015,0.0064,-0.001,0.0085,0.0089,0.0121,0.0121
switzerland:Grave_9,0.0112,0.0132,0.0178,0.0159,0.0164,0.0082,0.0026,0.0053,-0.0048,-0.0021,-0.0023,0.0063,-0.003,-0.0109,0.0146,0.0208,0.0111,0.0057,0.0083,0.007,0.0063,0.0006,0.0018,0.0122,-0.0038
Posts: 216
Threads: 18
Joined: Oct 2023
Gender: Male
Ethnicity: Mestizo
Nationality: Mexican
Y-DNA (P): E1b-L19 -> M183 -> PF2546
Y-DNA (M): E1b-L19 -> M183 -> PF2546
mtDNA (M): B2g1
mtDNA (P): Unknown
Country:
(04-07-2024, 02:42 PM)ph2ter Wrote: (04-07-2024, 04:59 AM)ilabv Wrote: (03-17-2024, 12:12 PM)pelop Wrote: https://www.sciencedirect.com/science/ar...4223022927
https://www.sciencedirect.com/science/ar...4223011112
Bioarchaeological analyses reveal long-lasting continuity at the periphery of the Late Antique Roman Empire: https://www.sciencedirect.com/science/ar...4223011112
Code: Scaled
switzerland:Grave_1,0.121791,0.149283,0.071653,0.053618,0.052625,0.034025,-0.007285,0.006231,-0.0045,0.002551,-0.00747,0.00045,-0.015758,-0.022432,0.028773,0.025722,0.01343,-0.005701,0.001885,0.008004,-0.001248,0.01051,0.010969,0.01458,0.01449
switzerland:Grave_9,0.127482,0.13405,0.067127,0.051357,0.050471,0.022869,0.00611,0.01223,-0.009817,-0.003827,-0.003735,0.009442,-0.00446,-0.015001,0.019815,0.027579,0.014473,0.007221,0.010433,0.008754,0.007861,0.000742,0.002218,0.014701,-0.00455
Raw
switzerland:Grave_1,0.0107,0.0147,0.019,0.0166,0.0171,0.0122,-0.0031,0.0027,-0.0022,0.0014,-0.0046,0.0003,-0.0106,-0.0163,0.0212,0.0194,0.0103,-0.0045,0.0015,0.0064,-0.001,0.0085,0.0089,0.0121,0.0121
switzerland:Grave_9,0.0112,0.0132,0.0178,0.0159,0.0164,0.0082,0.0026,0.0053,-0.0048,-0.0021,-0.0023,0.0063,-0.003,-0.0109,0.0146,0.0208,0.0111,0.0057,0.0083,0.007,0.0063,0.0006,0.0018,0.0122,-0.0038
What about those ones?
Scaled
colonial_black_mexico:SJN001,-0.621474,0.062963,0.021496,0.014858,-0.004924,0.006414,-0.030316,0.025614,-0.038246,0.028064,0.011692,-0.007194,0.019772,-0.007294,0.0038,-0.010209,0.007693,0.011275,0.00993,-0.006128,-0.004492,0.000371,-0.002095,-0.008073,-0.001197
colonial_black_mexico:SJN002,-0.622612,0.053823,0.029038,0.017119,0.004308,0.014223,-0.013161,0.020768,-0.03661,0.012939,0.001137,-0.003447,-0.008176,-0.003165,-0.0038,0.005171,0.001565,0.00266,-0.003017,0.002626,0.006613,-0.003462,0.001972,0.003735,0.000239
colonial_black_mexico:SJN003,-0.626027,0.063978,0.021873,0.016796,-0.005847,0.01255,-0.019741,0.01523,-0.037837,0.020046,0.001137,-0.004346,-0.002973,0.00289,-0.008686,-0.001724,-0.004824,0.005321,-0.010936,0.001376,-0.001622,-0.003586,0.000246,-0.005784,-0.002395
Raw
colonial_black_mexico:SJN001,-0.0546,0.0062,0.0057,0.0046,-0.0016,0.0023,-0.0129,0.0111,-0.0187,0.0154,0.0072,-0.0048,0.0133,-0.0053,0.0028,-0.0077,0.0059,0.0089,0.0079,-0.0049,-0.0036,0.0003,-0.0017,-0.0067,-0.001
colonial_black_mexico:SJN002,-0.0547,0.0053,0.0077,0.0053,0.0014,0.0051,-0.0056,0.009,-0.0179,0.0071,0.0007,-0.0023,-0.0055,-0.0023,-0.0028,0.0039,0.0012,0.0021,-0.0024,0.0021,0.0053,-0.0028,0.0016,0.0031,0.0002
colonial_black_mexico:SJN003,-0.055,0.0063,0.0058,0.0052,-0.0019,0.0045,-0.0084,0.0066,-0.0185,0.011,0.0007,-0.0029,-0.002,0.0021,-0.0064,-0.0013,-0.0037,0.0042,-0.0087,0.0011,-0.0013,-0.0029,0.0002,-0.0048,-0.002
23andMe: 55.5% European, 33.7% Indigenous American, 4.2% WANA, 3.4% SSA and 3.2% Unassigned
AncestryDNA: 57.27% Europe, 35.81% Indigenous Americas-Mexico, 3.46% MENA and 3.45% SSA
FamilyTreeDNA: 56.9% Europe, 33% Americas, 8.2% MENA, <2% Horn of Africa and <1% Eastern India
Living DNA: 63.3% West Iberia, 34.3% Native Americas and 2.3% Yorubaland
MyHeritage DNA: 60.8% Mesoamerican & Andean, 21% European, 14.9% MENA and 3.3% Nigerian
[1] "penalty= 0.001"
[1] "Ncycles= 1000"
[1] "distance%=2.1116"
Jalisciense
Iberian EMA,50.2
Native American,34.6
Guanche,7.4
Levantine EBA,4.6
African,3.2
Posts: 491
Threads: 6
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Gender: Male
Ethnicity: Kaikavian Croatian
Nationality: Croatian
Y-DNA (P): I2-A815-FGC92673-Y246976
mtDNA (M): HV0-T195C!-a24
04-07-2024, 10:35 PM
(This post was last modified: 04-07-2024, 10:35 PM by ph2ter.)
(04-07-2024, 10:21 PM)Jalisciense Wrote: What about those ones?
Scaled
colonial_black_mexico:SJN001,-0.621474,0.062963,0.021496,0.014858,-0.004924,0.006414,-0.030316,0.025614,-0.038246,0.028064,0.011692,-0.007194,0.019772,-0.007294,0.0038,-0.010209,0.007693,0.011275,0.00993,-0.006128,-0.004492,0.000371,-0.002095,-0.008073,-0.001197
colonial_black_mexico:SJN002,-0.622612,0.053823,0.029038,0.017119,0.004308,0.014223,-0.013161,0.020768,-0.03661,0.012939,0.001137,-0.003447,-0.008176,-0.003165,-0.0038,0.005171,0.001565,0.00266,-0.003017,0.002626,0.006613,-0.003462,0.001972,0.003735,0.000239
colonial_black_mexico:SJN003,-0.626027,0.063978,0.021873,0.016796,-0.005847,0.01255,-0.019741,0.01523,-0.037837,0.020046,0.001137,-0.004346,-0.002973,0.00289,-0.008686,-0.001724,-0.004824,0.005321,-0.010936,0.001376,-0.001622,-0.003586,0.000246,-0.005784,-0.002395
Raw
colonial_black_mexico:SJN001,-0.0546,0.0062,0.0057,0.0046,-0.0016,0.0023,-0.0129,0.0111,-0.0187,0.0154,0.0072,-0.0048,0.0133,-0.0053,0.0028,-0.0077,0.0059,0.0089,0.0079,-0.0049,-0.0036,0.0003,-0.0017,-0.0067,-0.001
colonial_black_mexico:SJN002,-0.0547,0.0053,0.0077,0.0053,0.0014,0.0051,-0.0056,0.009,-0.0179,0.0071,0.0007,-0.0023,-0.0055,-0.0023,-0.0028,0.0039,0.0012,0.0021,-0.0024,0.0021,0.0053,-0.0028,0.0016,0.0031,0.0002
colonial_black_mexico:SJN003,-0.055,0.0063,0.0058,0.0052,-0.0019,0.0045,-0.0084,0.0066,-0.0185,0.011,0.0007,-0.0029,-0.002,0.0021,-0.0064,-0.0013,-0.0037,0.0042,-0.0087,0.0011,-0.0013,-0.0029,0.0002,-0.0048,-0.002
Posts: 149
Threads: 15
Joined: Oct 2023
(04-07-2024, 02:42 PM)ph2ter Wrote: [quote pid="15225" dateline="1712465994"]
Bioarchaeological analyses reveal long-lasting continuity at the periphery of the Late Antique Roman Empire: https://www.sciencedirect.com/science/ar...4223011112
Code: Scaled
switzerland:Grave_1,0.121791,0.149283,0.071653,0.053618,0.052625,0.034025,-0.007285,0.006231,-0.0045,0.002551,-0.00747,0.00045,-0.015758,-0.022432,0.028773,0.025722,0.01343,-0.005701,0.001885,0.008004,-0.001248,0.01051,0.010969,0.01458,0.01449
switzerland:Grave_9,0.127482,0.13405,0.067127,0.051357,0.050471,0.022869,0.00611,0.01223,-0.009817,-0.003827,-0.003735,0.009442,-0.00446,-0.015001,0.019815,0.027579,0.014473,0.007221,0.010433,0.008754,0.007861,0.000742,0.002218,0.014701,-0.00455
[/quote]
Summary from the paper
Quote: The Basel-Waisenhaus burial community (Switzerland) has been traditionally interpreted as immigrated Alamans because of the location and dating of the burial ground – despite the typical late Roman funeral practices. To evaluate this hypothesis, multi-isotope and aDNA analyses were conducted on the eleven individuals buried there. The results show that the burial ground was occupied around AD 400 by people belonging largely to one family, whereas isotope and genetic records most probably point toward a regionally organized and indigenous, instead of an immigrated, community. This strengthens the recently advanced assumption that the withdrawal of the Upper Germanic-Rhaetian limes after the “Crisis of the Third Century AD” was not necessarily related to a replacement of the local population by immigrated Alamannic peoples, suggesting a long-lasting continuity of occupation at the Roman periphery at the Upper and High Rhine region.
So the Grave_1+9 similarity maps by ph2ter seems in contrast with this summary looking very Germanic? Unless these two are outliers?
ph2ter and Andour like this post
Posts: 159
Threads: 1
Joined: Oct 2023
04-08-2024, 06:42 AM
(This post was last modified: 04-08-2024, 06:43 AM by ilabv.)
Upon request of a few people, Davidski sent me this sample that didn't originally make it due to low coverage: Biomolecular insights into North African-related ancestry, mobility and diet in eleventh-century Al-Andalus
https://www.nature.com/articles/s41598-021-95996-3
Code: spain_1_scaled,0.044391,0.147252,0.020742,-0.037791,0.0437,-0.028726,-0.024911,-0.001154,0.04745,0.037905,-0.004872,0,0.003865,-0.028626,0.008415,-0.015778,-0.011343,-0.010388,-0.012318,-0.01063,0.001872,-0.010263,0.003697,0.004097,0.010179
spain_1,0.0039,0.0145,0.0055,-0.0117,0.0142,-0.0103,-0.0106,-0.0005,0.0232,0.0208,-0.003,0,0.0026,-0.0208,0.0062,-0.0119,-0.0087,-0.0082,-0.0098,-0.0085,0.0015,-0.0083,0.003,0.0034,0.0085
Posts: 639
Threads: 64
Joined: Sep 2023
Gender: Male
Ethnicity: Berber
Nationality: North Africa
Y-DNA (P): E-V257(×M81)
Y-DNA (M): V
mtDNA (P): L2b
(04-08-2024, 06:42 AM)ilabv Wrote: Upon request of a few people, Davidski sent me this sample that didn't originally make it due to low coverage: Biomolecular insights into North African-related ancestry, mobility and diet in eleventh-century Al-Andalus
https://www.nature.com/articles/s41598-021-95996-3
Code: spain_1_scaled,0.044391,0.147252,0.020742,-0.037791,0.0437,-0.028726,-0.024911,-0.001154,0.04745,0.037905,-0.004872,0,0.003865,-0.028626,0.008415,-0.015778,-0.011343,-0.010388,-0.012318,-0.01063,0.001872,-0.010263,0.003697,0.004097,0.010179
spain_1,0.0039,0.0145,0.0055,-0.0117,0.0142,-0.0103,-0.0106,-0.0005,0.0232,0.0208,-0.003,0,0.0026,-0.0208,0.0062,-0.0119,-0.0087,-0.0082,-0.0098,-0.0085,0.0015,-0.0083,0.003,0.0034,0.0085
thank you so much is seems to me sample UE2298 1/4 ancestry North African and 3/4 ancestry local ( Iberian )
Megalophias likes this post
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2 Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta + 3% Iberian Peninsula
23andME : 100% North Africa
WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
Posts: 73
Threads: 1
Joined: Oct 2023
Posts: 22
Threads: 0
Joined: Dec 2023
Are there G25 co-ordinates for Ravasini's 2024 paper on the Picenes of ancient Adriatic Central Italy?
Y-DNA R-Z36 (A7967) mtDNA U6A7A1
Posts: 107
Threads: 5
Joined: Oct 2023
(04-09-2024, 08:43 AM)Cascio Wrote: Are there G25 co-ordinates for Ravasini's 2024 paper on the Picenes of ancient Adriatic Central Italy?
The data is still not available:
https://www.ebi.ac.uk/ena/browser/view/PRJEB62031
ChrisR, Cascio, pelop like this post
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Joined: Oct 2023
(04-07-2024, 01:50 PM)ilabv Wrote: Variable kinship patterns in Neolithic Anatolia revealed by ancient genomes: https://www.sciencedirect.com/science/ar...2221004231
neolithic_anatolia:Ash128
neolithic_anatolia:CCH294
neolithic_anatolia:cth739 Are they low coverage since (assumed by me) not included in the public G25?
Posts: 149
Threads: 15
Joined: Oct 2023
I think when last checking in Nov. I did not see results from the following study:
Archaeological questions and genetic answers: Male paternal kinship in a copper age multiple burial from the eastern (North) Italian Alps (Auer/Ora, Unterland/Upper Adige)
Paladin et al Aug. 2023
https://doi.org/10.1016/j.jasrep.2023.104103
Four FASTQ files for shotgun and capture generated in this study available at the European Nucleotide Archive (ENA)
https://www.ebi.ac.uk/ena/browser/view/PRJEB58428
genome coverage 0.07 X for Ind. A and 0.34 X for Ind. B - so probably only Ind. B makes sense to create G25? Would be still interesting to compare to Ötzi etc.
Show Content
SpoilerSo two Y-DNA G2a2b2a1a1b1 (ISOGG, 2019)
One mtDNA J1c + 16261 + 189 (Ind. A , Mol. ID 3058, son? younger?) G-CTS9737/etc*(xCTS8701,S24652)
One mtDNA K1a (Ind. B, Mol. ID 3059, father? older?) G-Z3205/etc*(xZ6900,Y19947)
Copper Age (Ind. A: LTL-3607A 4279 ± 45 BP, 3021–2705 cal. BC [95.4%]; Ind. B: LTL-3607A 4268 ± 35 BP, 3008–2707 cal. BC [95.4%]
Posts: 159
Threads: 1
Joined: Oct 2023
(04-09-2024, 11:57 AM)ChrisR Wrote: I think when last checking in Nov. I did not see results from the following study:
Archaeological questions and genetic answers: Male paternal kinship in a copper age multiple burial from the eastern (North) Italian Alps (Auer/Ora, Unterland/Upper Adige)
Paladin et al Aug. 2023
https://doi.org/10.1016/j.jasrep.2023.104103
Four FASTQ files for shotgun and capture generated in this study available at the European Nucleotide Archive (ENA)
https://www.ebi.ac.uk/ena/browser/view/PRJEB58428
genome coverage 0.07 X for Ind. A and 0.34 X for Ind. B - so probably only Ind. B makes sense to create G25? Would be still interesting to compare to Ötzi etc.
Show Content
SpoilerSo two Y-DNA G2a2b2a1a1b1 (ISOGG, 2019)
One mtDNA J1c + 16261 + 189 (Ind. A , Mol. ID 3058, son? younger?) G-CTS9737/etc*(xCTS8701,S24652)
One mtDNA K1a (Ind. B, Mol. ID 3059, father? older?) G-Z3205/etc*(xZ6900,Y19947)
Copper Age (Ind. A: LTL-3607A 4279 ± 45 BP, 3021–2705 cal. BC [95.4%]; Ind. B: LTL-3607A 4268 ± 35 BP, 3008–2707 cal. BC [95.4%]
Thanks. No one alerted me on these. I'll get them done
Posts: 159
Threads: 1
Joined: Oct 2023
The genomic origin of Zana of Abkhazia: https://onlinelibrary.wiley.com/doi/10.1002/ggn2.10051
Quote:Scaled
abkhazia:Khwit_final,-0.243581,0.075149,-0.001131,-0.013243,-0.019388,-0.001673,-0.00846,0.013846,-0.022498,-0.028247,-0.007145,0.008992,-0.018583,-0.000138,0.01045,-0.013922,0.017602,-0.010008,0.001634,0.008254,0.001123,0.009274,0.005176,-0.009881,0.005987
abkhazia:Zana_final,-0.586189,0.063978,0.015839,-0.002907,0.000308,0.002789,-0.028436,0.028153,0.008385,-0.028247,-0.007632,0.015736,-0.010852,-0.003441,0.012079,-0.012994,0.008996,-0.013049,0.013073,-0.005628,-0.000499,0.008408,-0.007272,-0.004338,-0.001317
Raw
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Posts: 159
Threads: 1
Joined: Oct 2023
04-09-2024, 01:25 PM
(This post was last modified: 04-15-2024, 02:08 PM by AimSmall.)
Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-Term Effect of Yersinia pestis on Human Immunity Genes: https://academic.oup.com/mbe/article/38/...ogin=false
Quote:Scaled
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Raw
Code: ellwangen:EL1,0.0112,0.013,0.0128,0.0057,0.0126,0.0001,0.0023,0.006,0.0055,0.0023,-0.0028,-0.0006,-0.0132,-0.0031,0.0068,0.0016,-0.0032,-0.0011,0.0031,0.0014,0.0013,0.0139,0.0092,0.0064,0.006
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ellwangen:EL10,0.0112,0.0146,0.0137,0.008,0.0076,-0.0006,0.0042,0.0099,0.0018,0.0034,-0.0034,0.0077,-0.0122,-0.0032,0.0087,0.0001,-0.0035,0.0017,0.004,0.0105,-0.0052,0.0138,0.0073,0.0106,-0.0017
ellwangen:EL11,0.0105,0.0135,0.014,0.009,0.0116,0.0027,0.0059,0.0026,0.0026,0.0007,0.0013,0.0047,-0.0083,-0.0064,0.0116,0.0112,0.0101,-0.0045,0.0052,0.0039,0.0032,-0.009,0.0046,0.0031,-0.0021
ellwangen:EL14,0.0115,0.0134,0.0135,0.009,0.0123,0.0073,0.0022,0.0043,0.0042,0.0089,-0.002,0.0089,-0.0086,0.0008,0.0122,0.0167,-0.0033,-0.0035,0.0013,0.0055,-0.0031,0.0031,0.0061,0.0138,-0.0013
ellwangen:EL15,0.0111,0.0133,0.0141,0.0037,0.0115,0.0043,0.0018,0.0012,0.0066,0.0044,-0.0015,-0.0028,-0.0063,0.0001,-0.0017,-0.0014,-0.0009,-0.0053,-0.0084,0.0004,0.0026,-0.0009,0.0009,0.0057,0.0026
ellwangen:EL16,0.0116,0.016,0.0155,0.0116,0.015,0.0047,0.0045,0.0014,0.0032,-0.0012,0.0012,0.0098,-0.007,0.0034,0.0056,-0.018,-0.0156,-0.0066,0.0083,-0.0029,-0.003,-0.003,0.0021,0.0052,-0.0082
ellwangen:EL17,0.011,0.0129,0.0143,0.0096,0.0095,0.004,0.0073,0.0064,0.003,0.0056,0.0009,-0.0031,-0.0007,-0.0073,0.0086,0.0086,0.0179,0.0082,0.0092,0.008,-0.0044,0.0046,0.02,-0.0068,0.0062
ellwangen:EL18,0.0108,0.0131,0.0118,0.0095,0.0093,0.0036,0.0073,0.0053,0.0031,0.0039,0.0017,0.0067,0.0078,-0.0019,0.0027,-0.0003,-0.002,-0.0021,0.0094,-0.0099,-0.0033,0.0061,0.0108,0.0067,-0.0047
ellwangen:EL19,0.0122,0.0138,0.0122,0.0106,0.0111,0.0076,0.0004,0.003,0.0054,0.0022,0.0054,-0.0029,-0.0083,-0.0041,0.0068,-0.0023,-0.0088,0.0099,0.0167,0.0106,0.0073,0.0023,-0.0086,-0.003,-0.0193
ellwangen:EL21,0.0122,0.0145,0.0122,0.0091,0.0147,0.0064,0.0038,0.0016,-0.0037,-0.0012,-0.0063,0.0009,-0.0021,-0.0103,0.0057,0.0018,-0.0025,0.0019,0.0016,-0.0003,0.0015,0.0023,-0.0018,0.006,-0.0008
ellwangen:EL22,0.0112,0.0133,0.0106,0.0031,0.0144,0.006,-0.0032,0.0015,0.005,0.0085,-0.0037,0.0062,-0.008,-0.0042,0.0014,-0.0025,-0.0083,0.0031,-0.0023,-0.0134,-0.0054,-0.0002,0.0033,0.006,-0.003
ellwangen:EL24,0.0115,0.0136,0.0174,0.012,0.0112,0.0095,0.005,0.0015,0.0016,-0.0044,-0.0043,-0.0031,0.0056,0.0026,0.0036,0.0096,0.0075,-0.0068,0.0107,0.0068,-0.0009,-0.0051,-0.0002,0.0007,-0.0018
ellwangen:EL27,0.0108,0.0147,0.0132,0.0128,0.0129,0.005,-0.0035,0.0023,0.0055,0.0009,-0.0029,-0.0001,0.0026,0.0042,0.0114,-0.0002,-0.0204,-0.0023,0.0027,0.0005,0.0057,0.0084,0.0042,0.0083,-0.0021
ellwangen:EL30,0.0116,0.0142,0.0125,0.0066,0.0132,0.0022,0,0.0018,0.009,0.0046,0.0018,0.0026,-0.0026,0.0046,0.0099,0.0029,-0.0119,-0.0003,-0.0046,-0.0058,0.0139,-0.0011,0.0044,0.0157,-0.0005
ellwangen:EL32,0.0109,0.014,0.0142,0.0076,0.0129,0.0053,0.0041,0.0052,0.0009,0.0075,-0.0063,0.0079,-0.0045,-0.005,0.0112,-0.0087,-0.0056,-0.0089,0.0066,0.0032,0.0044,0.0057,-0.0056,0.0065,0.0019
ellwangen:EL33,0.0107,0.0124,0.0133,0.0117,0.0158,0.0039,0.0022,0.0017,0.0018,-0.0011,-0.0053,0.0026,-0.0043,-0.0106,-0.003,0.0067,0.0108,0.0068,0.0009,-0.0085,-0.012,0.0072,0.0006,0.0126,-0.0122
ellwangen:EL44,0.012,0.0123,0.0135,0.0077,0.0155,0.0055,-0.0015,0.0001,-0.0003,0.0023,-0.012,0.0019,0.0039,-0.0025,-0.002,-0.0018,-0.0003,0.007,0.0075,-0.0003,0.0065,0.0039,0.0027,-0.0035,0.0026
ellwangen:EL46,0.0114,0.0134,0.0119,0.0102,0.0136,0.006,0.005,0.0025,0.0021,0.0081,-0.0018,-0.0049,-0.0106,-0.0071,0.0106,0.0007,0.0004,0.0063,0.0025,0.0034,-0.0055,0.0034,-0.012,0.0052,0.0066
ellwangen:EL47,0.0117,0.0135,0.0146,0.0117,0.0081,0.0004,-0.0019,0.006,-0.0005,0.0067,-0.0035,-0.0033,-0.0013,-0.0028,0.0198,0.0079,0.007,-0.0058,0.0071,-0.0041,-0.0087,0.0064,-0.0003,0.0091,0.0022
ellwangen:EL48,0.0106,0.015,0.0112,0.0077,0.0112,0.008,-0.0007,0.0056,-0.0053,0.0058,-0.0037,0.0042,-0.0027,-0.0071,0.0099,0.006,0.0139,0.0006,-0.01,0.0007,-0.0028,0.0064,-0.0032,0.0194,-0.0055
ellwangen:EL49,0.0108,0.0142,0.0111,0.0073,0.0126,0.0016,0.0002,0.0045,0.0046,-0.0014,-0.0008,0.0058,-0.0014,0.0021,0.0061,-0.011,-0.0096,0.0018,0.0058,-0.0054,-0.0037,0.0108,0.0048,0.0185,-0.001
ellwangen:EL50,0.0119,0.0145,0.0126,0.0057,0.0102,0.0041,0.0026,0.0016,0.0041,-0.0037,-0.0016,0.0055,-0.0023,0.0052,0.0079,-0.0025,-0.0183,0.0079,0.0042,0.0073,-0.0049,0.0017,-0.0003,0.0015,-0.0053
ellwangen:EL51,0.0109,0.0137,0.013,0.0084,0.0125,0.0033,0.0042,0.0041,0.0005,0.0047,-0.0051,-0.0034,-0.0036,0.0035,0.0044,0.0059,-0.0163,0.0106,0.0079,-0.0081,-0.0023,0.007,-0.0036,0.0071,0.0045
ellwangen:EL53,0.0114,0.0126,0.0133,0.0123,0.0103,0.0054,0.0011,0.0014,0.0006,-0.0021,-0.0025,-0.0006,0.0017,0.0047,0.0039,-0.0015,-0.0164,-0.0043,0.0061,-0.0065,-0.0074,0.0078,-0.0114,0.0108,0.0079
ellwangen:EL55,0.0112,0.0144,0.0108,0.006,0.0107,0.0036,0.006,0.0058,-0.0003,0.0037,-0.0038,-0.0004,-0.0056,0.0019,0.0044,-0.0064,-0.0119,0.0011,0.0045,-0.0047,-0.0072,0.0079,-0.0075,0.0044,0.0096
ellwangen:EL57,0.0122,0.0146,0.0123,0.0049,0.0138,-0.0026,-0.0083,0.0021,-0.0015,0.0021,-0.0007,0.0124,-0.0119,-0.0077,-0.0034,-0.0069,-0.0187,0.0053,-0.005,0.01,0.0117,-0.0069,0.0054,-0.0028,0.0032
ellwangen:EL59,0.0109,0.0141,0.0154,0.0112,0.0109,0.0058,0.0102,0.0064,0.0021,-0.0011,0.0004,0.0039,0.0038,0.0102,0.0042,-0.0044,-0.0052,0.0127,-0.0078,0.0043,0.0041,-0.0034,0.0011,0.0002,0.0069
ellwangen:EL60,0.011,0.0142,0.011,0.0066,0.0153,0.0008,0.0031,0.0006,-0.0051,0.0091,-0.0005,-0.0007,-0.0076,-0.0148,0.0036,0.0109,-0.0065,-0.0035,0.0078,-0.0002,0.0021,0.0004,0.0027,0.0028,0.0054
ellwangen:EL63,0.0115,0.0136,0.0132,0.0063,0.0105,-0.0007,0.0005,0.0005,0.003,-0.0025,-0.0079,0.0037,-0.0068,-0.0034,-0.0008,0.0176,0.0091,0.0031,0.0036,0.004,0.0128,0.0109,0.0032,0.0069,-0.007
ellwangen:EL64,0.0114,0.0138,0.0094,0.0053,0.0129,0.0026,0.0047,-0.0014,0.0035,0.0008,-0.005,0.0114,-0.0028,-0.0068,-0.0024,0.0093,-0.0038,0.0066,-0.0053,-0.0006,0.0008,0.0112,-0.0055,0.0031,-0.0033
ellwangen:EL66,0.0109,0.0134,0.0123,0.0049,0.0102,0.0044,-0.0021,0.0052,-0.0023,0.0067,-0.0071,0.0015,-0.0044,0.0011,0.0027,0.0002,0.0023,-0.0015,0.001,0.0079,-0.001,0.0058,-0.0049,0.0124,0.007
ellwangen:EL74,0.0119,0.013,0.016,0.013,0.0103,0.0025,-0.0005,0.0039,-0.0039,0.0033,-0.007,-0.0103,-0.0021,0.0005,0.0063,0.0112,0.0046,0.0034,-0.0116,0.0043,0.0148,0.0061,-0.0048,0.0077,-0.0032
ellwangen:EL106,0.0122,0.0137,0.0141,0.0074,0.0102,0.0055,0.0044,-0.0019,-0.0004,0.0028,0.0018,0.0122,-0.0069,0.0055,-0.0041,-0.006,-0.0095,0.0058,-0.0006,0.0159,-0.0081,0.0072,0.0021,-0.0105,-0.014
ellwangen:EL107,0.0111,0.0135,0.0122,0.0101,0.0137,0.0032,0.0036,0.0091,0.0047,0.0005,-0.0011,-0.0049,0.0027,0.0102,-0.0038,-0.012,-0.0119,0.0077,0.0001,0.0043,-0.0039,0.0071,0.0081,0.0006,0.0038
ellwangen:ELW005,0.01,0.0134,0.0118,0.0083,0.0112,0.0061,0.0029,0.0046,0.0014,0.0026,-0.0015,-0.0033,0.0005,-0.0034,0.004,0.0001,-0.0055,0.0126,-0.0047,-0.0075,0.0096,-0.0002,0.0068,0.018,0.0119
ellwangen:ELW008,0.0106,0.0147,0.0102,0.0074,0.006,0.0034,0.0007,0.0008,-0.0052,-0.0032,-0.0006,-0.0003,-0.0085,-0.0097,0.004,0.0032,0.0063,-0.0102,-0.0057,-0.0068,0.0009,-0.0073,-0.0027,-0.0003,0.0031
ellwangen:ELW010,0.0118,0.0134,0.0136,0.0069,0.0136,-0.0005,0.0028,0.0005,0.0066,0.0057,-0.0105,-0.0062,-0.0022,-0.006,-0.0038,-0.0003,-0.0005,0.0001,-0.0034,0.0002,0.0046,0.0053,-0.0061,0.0087,-0.0018
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