Ancient DNA Reveals the First Known Neanderthal Family

[Quint]

Spy, that was also the one with the greatest Eurasian "affinity" in G25 before the new samples from this study appeared:

   
(X: 1, Y: 3, Z: 4)

Code:

Distance difference: ( AC - BC ) ↑
A: Spy_final_provisional.SG
B: Altai_snpAD.DG
C: ↴
-0.04367648 Kamboj:KJ_03
-0.04366371 Pakistani:F069316
-0.04365953 Arain:ARN013
-0.04365612 Pakistani:F073540
-0.04363252 Pashtun_Tarkalani:T-215
-0.04360587 Tajik_Panjshir
-0.04360563 Arain:ARN005
-0.04358377 Pashtun_Yusufzai:Y-216
-0.04357319 Brahui:HGDP00031
-0.04356504 Punjabi_Lahore:HG03767.SG
-0.04356504 Punjabi_Lahore:HG03767.SG
-0.04356353 Pashtun_Tarkalani_Kakazai
-0.04356339 Pakistan_Katelai_IA:I12461
-0.04356335 Khatri:K-69
-0.04355636 Khatri:K-56
-0.04354994 Punjabi_Sikh_India:PanSikh32765
-0.04354013 Kashmiri_Pakistan_o:YPAJK056
-0.04354013 Kashmiri_Pakistan_o:YPAJK056
-0.04353807 Khatri:K-34
-0.04352861 Punjabi_Sikh_India:PanSikh14311
-0.04352648 Punjabi_Lahore:HG02604.SG
-0.04352648 Punjabi_Lahore:HG02604.SG
-0.04352616 Pashtun_Yusufzai:Y-122
-0.04352576 Pashtun_Khattak_Nowshera:PKN_ZA
-0.04352487 Punjabi_Sikh_India:PanSikh28494


Distance difference: ( AC - BC ) ↓
A: Spy_final_provisional.SG
B: Altai_snpAD.DG
C: ↴
0.03984008 Chagyrskaya.SG
0.03791609 Vindija_snpAD.DG
0.03269506 Denisova_snpAD.DG
0.02189159 Goyet_final_provisional.SG
0.02092926 Chimp.REF
0.01654583 Denisova11.SG
0.01226479 Ancestor.REF
0.00886643 Les_Cottes_final_provisional.SG
0.00757514 Mbuti:A_Mbuti-5.DG
0.00733871 Mbuti:S_Mbuti-2.DG
0.00706780 Mbuti
0.00702710 Mbuti:S_Mbuti-1.DG
0.00694033 Mbuti:B_Mbuti-4.DG
0.00639248 Mbuti:S_Mbuti-3.DG
0.00627338 Pygmy:AFP4
0.00559918 Pygmy:AFP8
0.00543924 Pygmy:AFP10
0.00435839 Pygmy:AFP28
0.00425261 Pygmy:AFP29
0.00404787 Pygmy:AFP9
0.00355300 Pygmy:AFP20
0.00349508 Pygmy:AFP25
0.00345691 Pygmy:AFP11
0.00320001 Pygmy:AFP5
0.00316641 Mbuti_(low_res)

Code:

Altai_snpAD.DG,-0.664727,0.051792,0.032055,0.067184,0.014772,-0.023985,0.264622,-0.203991,-0.028838,0.056129,0.009256,-0.061295,-0.006987,0.001514,0.010722,-0.015115,0.014212,0.148986,-0.041606,-0.001126,-0.017095,0.001237,-0.002342,-0.007832,-0.010298
Ancestor.REF,-0.667003,0.05687,0.027907,0.055879,0.008925,-0.006972,0.250756,-0.187377,-0.023725,0.040274,0.008282,-0.062794,-0.006838,0.001651,0.008415,-0.011535,0.014864,0.143792,-0.041229,-0.003126,-0.014225,0.001113,-0.001602,-0.005904,-0.010897
Chagyrskaya.SG,-0.663589,0.050776,0.032432,0.068799,0.01508,-0.023706,0.264387,-0.20353,-0.030065,0.057404,0.009581,-0.063244,-0.006838,0.000138,0.009908,-0.014054,0.012386,0.149746,-0.041732,0.001751,-0.017594,0.001484,-0.001109,-0.008073,-0.010658
Chimp.REF,-0.676109,0.057885,0.02753,0.056525,0.009848,-0.00753,0.253106,-0.191992,-0.024134,0.040092,0.008444,-0.061595,-0.005203,0.00234,0.010722,-0.011933,0.015255,0.143792,-0.043869,-0.002501,-0.01435,0.000618,-0.000246,-0.004217,-0.009939
Denisova11.SG,-0.657898,0.051792,0.025267,0.069768,0.017542,-0.02761,0.256162,-0.196607,-0.028633,0.049022,0.008769,-0.057399,-0.002676,-0.000275,0.011129,-0.013524,0.015776,0.13657,-0.037332,0.003752,-0.01722,-0.001484,-0.002218,-0.004458,-0.010538
Denisova_snpAD.DG,-0.674971,0.052808,0.024513,0.071706,0.018773,-0.03514,0.261332,-0.19753,-0.033133,0.046106,0.010555,-0.061595,-0.001933,-0.000826,0.010043,-0.01538,0.015646,0.145692,-0.042235,-0.002251,-0.019216,0.000866,0.000616,-0.003133,-0.015567
Goyet_final_provisional.SG,-0.655621,0.049761,0.030547,0.069768,0.014772,-0.02259,0.257572,-0.20653,-0.029451,0.057769,0.007307,-0.066841,-0.008771,0.000275,0.011536,-0.013922,0.012126,0.145312,-0.040978,-0.001,-0.013975,0.002473,-0.003574,-0.002892,-0.008742
Les_Cottes_final_provisional.SG,-0.651068,0.051792,0.029793,0.067507,0.016003,-0.021753,0.251931,-0.199146,-0.029042,0.056493,0.003573,-0.061745,-0.00773,0,0.012215,-0.013922,0.010822,0.143792,-0.040475,-0.000125,-0.017719,0.001237,-0.002465,-0.005784,-0.007305
Mezmaiskaya1_final_provisional.SG,-0.631718,0.044683,0.030924,0.065246,0.015387,-0.016455,0.246526,-0.193146,-0.027815,0.050662,0.006658,-0.059347,-0.004311,0.004129,0.013708,-0.012861,0.008214,0.145565,-0.037081,0.007629,-0.012977,-0.000371,-0.006655,-0.003133,-0.008981
Mezmaiskaya2_final_provisional.SG,-0.638548,0.049761,0.032809,0.070414,0.016311,-0.021196,0.248876,-0.193838,-0.024134,0.054489,0.01153,-0.062045,-0.011001,0.000138,0.010993,-0.014452,0.0103,0.140878,-0.038966,0.002001,-0.011605,-0.003957,0.001232,-0.004217,-0.011256
Spy_final_provisional.SG,-0.626027,0.052808,0.022627,0.064277,0.010156,-0.017849,0.249816,-0.192684,-0.027202,0.054671,0.006171,-0.063094,-0.008028,-0.00523,0.012893,-0.010077,0.012778,0.149112,-0.042486,0.003377,-0.017095,-0.001607,0,-0.001807,-0.011735
Vindija_snpAD.DG,-0.663589,0.049761,0.030924,0.070091,0.014156,-0.023706,0.263682,-0.203761,-0.02986,0.058133,0.008607,-0.063693,-0.006838,-0.000413,0.010315,-0.015115,0.012256,0.150886,-0.042235,0.000375,-0.014974,0.000371,-0.000863,-0.007109,-0.009819
VindijaG1_final_provisional.SG,-0.637409,0.044683,0.032055,0.067184,0.012925,-0.0251,0.246526,-0.19453,-0.025975,0.050479,0.010393,-0.06714,-0.011596,-0.000826,0.008279,-0.012729,0.01356,0.141384,-0.040349,0.004752,-0.014225,-0.002226,-0.002465,-0.005302,-0.010897

(Thank you to Ajeje Brazorf for making these available on Anthrogenica)