|
Search Results
|
| Post |
Author |
Forum |
Replies |
Views |
Posted
[asc]
|
| |
|
Thread: sons admixtools2 run
Post: RE: sons admixtools2 run
|
Mulay 'Abdullah Wrote: (05-11-2024, 03:37 PM)
--
Genetics189291 Wrote: (05-10-2024, 09:22 PM)
--
Mozabite
Code:
--
> qp$weights
# A tibble: 4 × 5
target left weight ... |
|
Genetics189291 |
Autosomal (auDNA)
|
6 |
190 |
05-11-2024, 04:43 PM |
| |
|
Thread: sons admixtools2 run
Post: RE: sons admixtools2 run
| Mozabite
Code:
--
> qp$weights
# A tibble: 4 × 5
target left weight se z
1 Mozabite.DG CanaryIslands_Guanche.SG 0.799 ... |
|
Genetics189291 |
Autosomal (auDNA)
|
6 |
190 |
05-10-2024, 09:22 PM |
| |
|
Thread: sons admixtools2 run
Post: RE: sons admixtools2 run
|
Code:
--
> qp$weights
# A tibble: 3 × 5
target left weight se z
1 Son CanaryIslands_Guanche.SG 0.730 0.0484 15.1
2 Son ... |
|
Genetics189291 |
Autosomal (auDNA)
|
6 |
190 |
05-10-2024, 08:55 PM |
| |
|
Thread: North African QPADM runs
Post: RE: North African QPADM runs
|
abceff Wrote: (12-02-2023, 10:16 AM)
--
Code:
--
> results$weights
# A tibble: 3 × 5
target left weight se z
1 abceff Mozabite.HO 0.639 ... |
|
Genetics189291 |
Northern
|
15 |
808 |
05-10-2024, 04:37 PM |
| |
|
Thread: sons admixtools2 run
Post: RE: sons admixtools2 run
| With papuan added
Code:
--
> qp$weights
# A tibble: 3 × 5
target left weight se z
1 Son Mozabite.DG 0.902 0.0227 39.8
2 Son Yoruba.DG 0.0541 0.0149 3.62
3... |
|
Genetics189291 |
Autosomal (auDNA)
|
6 |
190 |
05-10-2024, 04:32 PM |
| |
|
Thread: sons admixtools2 run
Post: RE: sons admixtools2 run
| two way modelling for my son
Code:
--
> qp$weights
# A tibble: 2 × 5
target left weight se z
1 Son CanaryIslands_Guanche.SG ... |
|
Genetics189291 |
Autosomal (auDNA)
|
6 |
190 |
05-10-2024, 03:13 PM |
| |
|
Thread: sons admixtools2 run
Post: sons admixtools2 run
|
Code:
--
>
> qp$weights
# A tibble: 3 × 5
target left weight se z
1 Son CanaryIslands_Guanche.SG 0.711 0.0499 14.2
2 So... |
|
Genetics189291 |
Autosomal (auDNA)
|
6 |
190 |
05-10-2024, 11:48 AM |
| |
|
Thread: Commands for admixtools2
Post: RE: Commands for admixtools2
|
Code:
--
> results$weights
# A tibble: 4 × 5
target left weight se z
1 Son Mozabite.DG 0.914 0.0674 13.6
2 Son BedouinB.DG -0.224 0.199 -1.12
3... |
|
Genetics189291 |
Inquiries Corner
|
2 |
115 |
05-10-2024, 10:01 AM |
| |
|
Thread: Commands for admixtools2
Post: Commands for admixtools2
| What’s the command to also show the p rate I forgot how to add it |
|
Genetics189291 |
Inquiries Corner
|
2 |
115 |
05-10-2024, 09:57 AM |
| |
|
Thread: Right populations to use for qpadm
Post: RE: Right populations to use for qpadm
|
Kale Wrote: (05-08-2024, 08:06 PM)
--
What time period are you looking at for sources/left pops?
--
A mixture of moderns, Iron Age and medieval thanks |
|
Genetics189291 |
Inquiries Corner
|
3 |
131 |
05-08-2024, 08:19 PM |
| |
|
Thread: Right populations to use for qpadm
Post: Right populations to use for qpadm
| Does anyone have a list of good right populations to use for north west Africans, also I need samples that can differentiate Arab and Levantine ancestry thanks |
|
Genetics189291 |
Inquiries Corner
|
3 |
131 |
05-08-2024, 07:59 PM |
| |
|
Thread: Datasets for North African samples
Post: RE: Datasets for North African samples
| I’m looking for Berber samples etc shilha and Kabyle samples if possible |
|
Genetics189291 |
Inquiries Corner
|
2 |
89 |
05-08-2024, 02:54 PM |
| |
|
Thread: Datasets for North African samples
Post: Datasets for North African samples
| Can someone point me in the direction of datasets with more Berber samples so I can merge them with mine |
|
Genetics189291 |
Inquiries Corner
|
2 |
89 |
05-08-2024, 02:26 PM |
| |
|
Thread: Dataset merging help
Post: RE: Dataset merging help
| It’s okay I seemed to have a found a way to merge it directly which is much easier then converting it back and forth, takes a fraction of the time I’ll go through the steps when I get back home |
|
Genetics189291 |
Inquiries Corner
|
14 |
438 |
05-08-2024, 09:53 AM |
| |
|
Thread: Dataset merging help
Post: RE: Dataset merging help
|
Anglesqueville Wrote: (05-07-2024, 02:20 PM)
--
Genetics189291, I'm seemingly on your ignore list. I can't therefore reply to your PM. I guess you want to convert from PLINK to EIGENSTRAT? If this is... |
|
Genetics189291 |
Inquiries Corner
|
14 |
438 |
05-07-2024, 03:28 PM |
| |
|
Thread: Dataset merging help
Post: RE: Dataset merging help
|
AimSmall Wrote: (05-05-2024, 11:34 PM)
--
Post the head of the file
--
Don’t know what I’m doing wrong but when I’m converting the file back after merging it, it just has control next to the ids |
|
Genetics189291 |
Inquiries Corner
|
14 |
438 |
05-06-2024, 08:45 PM |
| |
|
Thread: Dataset merging help
Post: RE: Dataset merging help
|
AimSmall Wrote: (05-05-2024, 11:34 PM)
--
Post the head of the file
--
I’ve seemed to fix that issue but not my problem is when I’m converting the file back after merging the names are not showing ... |
|
Genetics189291 |
Inquiries Corner
|
14 |
438 |
05-06-2024, 06:17 AM |
| |
|
Thread: Dataset merging help
Post: RE: Dataset merging help
|
AimSmall Wrote: (05-05-2024, 06:38 PM)
--
plink --23file 23andme_raw_data.txt --make-bed --out mydata
--
I got to the bit of merging the two files but I’m getting this now
Error: Line 1 of v54.... |
|
Genetics189291 |
Inquiries Corner
|
14 |
438 |
05-05-2024, 10:34 PM |
| |
|
Thread: Dataset merging help
Post: RE: Dataset merging help
|
AimSmall Wrote: (05-05-2024, 06:38 PM)
--
plink --23file 23andme_raw_data.txt --make-bed --out mydata
--
That seemed to work , if I remember what you taught me i have to convert the dataset into the... |
|
Genetics189291 |
Inquiries Corner
|
14 |
438 |
05-05-2024, 06:56 PM |
| |
|
Thread: Dataset merging help
Post: RE: QPADM HELP
|
AimSmall Wrote: (05-05-2024, 06:12 PM)
--
You have strand inconsistencies or flipped SNPs... I've never tried to merge Eigenstrat files, just PLINK. Your mileage may vary.
Here is how, who I cal... |
|
Genetics189291 |
Inquiries Corner
|
14 |
438 |
05-05-2024, 06:35 PM |
