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MyHeritage Raw DNA file
#16
(05-27-2024, 01:09 PM)ArmandoR1b Wrote:
(05-27-2024, 06:41 AM)Tolan Wrote: I also have 3495 lines and a few are "--".
Which means that there are all the SNPs tested in the file, including those which have no calls.

Yes, I had surmised that the 3495 lines was the total. I also found another two MH 2.0 GSA files with 3495 lines. One has 75 no-calls and the other 62 no-calls. So it seems that the minimum number of no-calls is 62 unless you have less. Most of those 62 are probably the same with everyone contrary to what was posted earlier in the thread. I've had ample experience looking at DNA files.

Right now I don't have time to analyze files but if you extract your Y-chromosome positions and genotype and into a new file and upload them so I can download the file, then sometime in the future, I could compare your no-calls with the no-calls of the others and see if any of them are haplogroup defining in the ISOGG database and maybe even see if they are in the Ybrowse database.


I have 117 no calls:
Code:
rs758698187
rs2534299
rs56160368
rs1038613
rs2350606
rs200887849
rs427332
rs418176
rs2882747
rs2437581
rs55803484
rs3100354
rs2883005
rs2563714
rs2435135
rs2558164
rs2574010
rs2573879
rs2578769
rs2556876
rs2566671
rs13303899
rs4027633
rs775547676
rs3096823
rs377624131
rs3097047
rs766613104
rs372286207
rs753650339
rs3903
rs187865793
rs72618728
rs746402982
rs2912647
rs111927750
rs9786846
rs11799219
rs772609696
rs111694250
rs74652064
rs775505119
rs775471717
rs12116389
rs35816667
rs35407486
rs111704731
rs13304344
rs796526210
rs796483281
rs13303468
rs7067251
rs13305939
rs4310385
rs9786211
rs796855462
rs72625386
rs781777817
rs775199734
rs775868676
rs7067440
rs1236455
rs9786869
rs7067234
rs111665403
rs36028121
rs9785638
rs867364114
rs1030966993
rs760292962
rs9786718
rs766503423
rs200091788
rs35430541
rs9786021
rs34184255
rs865977022
rs36007819
rs13304941
rs13305876
rs199841820
rs13303766
rs776110513
rs375525906
rs4568775
rs1833407
rs13304438
rs111467923
rs7067444
rs534678944
rs9786280
rs9786014
rs771852486
rs2032641
rs796188680
rs7067348
rs11799048
rs13305543
rs9786834
rs2704751
rs13304184
rs113494165
rs2932039
rs9782782
rs112197623
rs200852569
rs199636117
rs2196155
rs13305540
rs9341318
rs13447347
rs28631746
rs2913083
rs113311494
rs6530626
rs9785969
rs75332485
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#17
(05-28-2024, 08:19 AM)Tolan Wrote:
(05-27-2024, 01:09 PM)ArmandoR1b Wrote:
(05-27-2024, 06:41 AM)Tolan Wrote: I also have 3495 lines and a few are "--".
Which means that there are all the SNPs tested in the file, including those which have no calls.

Yes, I had surmised that the 3495 lines was the total. I also found another two MH 2.0 GSA files with 3495 lines. One has 75 no-calls and the other 62 no-calls. So it seems that the minimum number of no-calls is 62 unless you have less. Most of those 62 are probably the same with everyone contrary to what was posted earlier in the thread. I've had ample experience looking at DNA files.

Right now I don't have time to analyze files but if you extract your Y-chromosome positions and genotype and into a new file and upload them so I can download the file, then sometime in the future, I could compare your no-calls with the no-calls of the others and see if any of them are haplogroup defining in the ISOGG database and maybe even see if they are in the Ybrowse database.


I have 117 no calls:
Code:
rs758698187
rs2534299
rs56160368
rs1038613
rs2350606
rs200887849
rs427332
rs418176
rs2882747
rs2437581
rs55803484
rs3100354
rs2883005
rs2563714
rs2435135
rs2558164
rs2574010
rs2573879
rs2578769
rs2556876
rs2566671
rs13303899
rs4027633
rs775547676
rs3096823
rs377624131
rs3097047
rs766613104
rs372286207
rs753650339
rs3903
rs187865793
rs72618728
rs746402982
rs2912647
rs111927750
rs9786846
rs11799219
rs772609696
rs111694250
rs74652064
rs775505119
rs775471717
rs12116389
rs35816667
rs35407486
rs111704731
rs13304344
rs796526210
rs796483281
rs13303468
rs7067251
rs13305939
rs4310385
rs9786211
rs796855462
rs72625386
rs781777817
rs775199734
rs775868676
rs7067440
rs1236455
rs9786869
rs7067234
rs111665403
rs36028121
rs9785638
rs867364114
rs1030966993
rs760292962
rs9786718
rs766503423
rs200091788
rs35430541
rs9786021
rs34184255
rs865977022
rs36007819
rs13304941
rs13305876
rs199841820
rs13303766
rs776110513
rs375525906
rs4568775
rs1833407
rs13304438
rs111467923
rs7067444
rs534678944
rs9786280
rs9786014
rs771852486
rs2032641
rs796188680
rs7067348
rs11799048
rs13305543
rs9786834
rs2704751
rs13304184
rs113494165
rs2932039
rs9782782
rs112197623
rs200852569
rs199636117
rs2196155
rs13305540
rs9341318
rs13447347
rs28631746
rs2913083
rs113311494
rs6530626
rs9785969
rs75332485

Will you post the positions instead please?
Reply
#18
(05-28-2024, 11:55 PM)ArmandoR1b Wrote: [quote pid="19975" dateline="1716884354"]

Will you post the positions instead please?
[/quote]

Voici:

Code:
rs758698187    Y    2888203
rs2534299    Y    2967867
rs56160368    Y    3414949
rs1038613    Y    3521762
rs2350606    Y    3545167
rs200887849    Y    3662845
rs427332    Y    3781791
rs418176    Y    3818738
rs2882747    Y    4221644
rs2437581    Y    4369067
rs55803484    Y    4388629
rs3100354    Y    4670423
rs2883005    Y    4816476
rs2563714    Y    4918862
rs2435135    Y    5164932
rs2558164    Y    5203601
rs2574010    Y    5298470
rs2573879    Y    5377315
rs2578769    Y    5407917
rs2556876    Y    5603640
rs2566671    Y    5755550
rs13303899    Y    6404526
rs4027633    Y    6541648
rs775547676    Y    6753448
rs3096823    Y    7057319
rs377624131    Y    7061548
rs3097047    Y    7109122
rs766613104    Y    7374927
rs372286207    Y    7543143
rs753650339    Y    7583448
rs3903    Y    7583480
rs187865793    Y    7629098
rs72618728    Y    8082806
rs746402982    Y    8736334
rs2912647    Y    9030715
rs111927750    Y    9103499
rs9786846    Y    9376415
rs11799219    Y    9642917
rs772609696    Y    9847423
rs111694250    Y    9908071
rs74652064    Y    13687378
rs775505119    Y    14213646
rs775471717    Y    14423799
rs12116389    Y    14537123
rs35816667    Y    14653101
rs35407486    Y    14885368
rs111704731    Y    14943290
rs13304344    Y    14958218
rs796526210    Y    14958901
rs796483281    Y    15026395
rs13303468    Y    15082677
rs7067251    Y    15086183
rs13305939    Y    15156388
rs4310385    Y    15182178
rs9786211    Y    15377120
rs796855462    Y    15399159
rs72625386    Y    15414633
rs781777817    Y    15477748
rs775199734    Y    15499572
rs775868676    Y    15616741
rs7067440    Y    15742130
rs1236455    Y    16096330
rs9786869    Y    16263188
rs7067234    Y    16527693
rs111665403    Y    16567253
rs36028121    Y    16992232
rs9785638    Y    17119057
rs867364114    Y    17419925
rs1030966993    Y    17426117
rs760292962    Y    17595875
rs9786718    Y    17636088
rs766503423    Y    17716223
rs200091788    Y    17815397
rs35430541    Y    17944100
rs9786021    Y    17951267
rs34184255    Y    17985841
rs865977022    Y    18393814
rs36007819    Y    18417772
rs13304941    Y    18567437
rs13305876    Y    18608096
rs199841820    Y    18710853
rs13303766    Y    19060742
rs776110513    Y    19092598
rs375525906    Y    19215759
rs4568775    Y    19417394
rs1833407    Y    19443641
rs13304438    Y    20832062
rs111467923    Y    21095622
rs7067444    Y    21110154
rs534678944    Y    21705977
rs9786280    Y    21768404
rs9786014    Y    21787923
rs771852486    Y    21870325
rs2032641    Y    21873287
rs796188680    Y    21893299
rs7067348    Y    21952388
rs11799048    Y    21969615
rs13305543    Y    22019769
rs9786834    Y    22193299
rs2704751    Y    22302537
rs13304184    Y    22345984
rs113494165    Y    22437744
rs2932039    Y    22442215
rs9782782    Y    22444953
rs112197623    Y    22475403
rs200852569    Y    22521822
rs199636117    Y    22617318
rs2196155    Y    22665262
rs13305540    Y    22675702
rs9341318    Y    22745051
rs13447347    Y    22748506
rs28631746    Y    23482521
rs2913083    Y    23638549
rs113311494    Y    23962104
rs6530626    Y    24447989
rs9785969    Y    28769098
rs75332485    Y    28807236
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