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If there are studies with data that hasnt been converted to G25 provide them here
Bioarchaeological Perspectives on Late Antiquity in Dalmatia: Paleogenetic, Dietary, and Population Studies of the Hvar Radošević burial site

Probably DNA data is not available yet:

Genetic ID Dating mt haplogroup Y chromosome haplogroup Site
I35009 300-500 CE No genetic data E1b1b1a1b1 Hvar - Radošević
I34297 300-500 CE U5b1b J2a1a1a2b2a3b1a1b1a2~ Hvar - Radošević
I34292 300-500 CE U5b1b Hvar - Radošević
I34296 300-500 CE HV11 E1b1b1a1b1 Hvar - Radošević
I34294 300-500 CE W3a1 J2b2a1a1a1a1a1a Hvar - Radošević
I33811 300-500 CE U5b1b Hvar - Radošević
I33812 300-500 CE U1a3 Hvar - Radošević
I33889 300-500 CE H35 J1a2a1a1~ Hvar - Radošević
I34290 300-500 CE U8b1a1 Hvar - Radošević
I33885 300-500 CE H3k Hvar - Radošević
I33808 300-500 CE H3k J2a1a1b2a1b1b2c~ Hvar - Radošević
I33888 300-500 CE H9a J2a1a4b Hvar - Radošević
I33886 300-500 CE HV E1b1a1a1a1c1b2a2 Hvar - Radošević
I33809 300-500 CE HV12b1 J2a1a1a2b1b Hvar - Radošević
I33893 300-500 CE H5a3a2 Hvar - Radošević
I33890 300-500 CE R0a G2a2b2a1a1b2 Hvar - Radošević
I33891 300-500 CE K1c1 Hvar - Radošević

https://www.biorxiv.org/content/10.1101/...y-material
ChrisR, Capsian20, Radko And 2 others like this post
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(05-16-2024, 10:27 AM)ph2ter Wrote: Bioarchaeological Perspectives on Late Antiquity in Dalmatia: Paleogenetic, Dietary, and Population Studies of the Hvar Radošević burial site

Probably DNA data is not available yet:

Genetic ID Dating mt haplogroup Y chromosome haplogroup Site
I35009 300-500 CE No genetic data E1b1b1a1b1 Hvar - Radošević
I34297 300-500 CE U5b1b J2a1a1a2b2a3b1a1b1a2~ Hvar - Radošević
I34292 300-500 CE U5b1b Hvar - Radošević
I34296 300-500 CE HV11 E1b1b1a1b1 Hvar - Radošević
I34294 300-500 CE W3a1 J2b2a1a1a1a1a1a Hvar - Radošević
I33811 300-500 CE U5b1b Hvar - Radošević
I33812 300-500 CE U1a3 Hvar - Radošević
I33889 300-500 CE H35 J1a2a1a1~ Hvar - Radošević
I34290 300-500 CE U8b1a1 Hvar - Radošević
I33885 300-500 CE H3k Hvar - Radošević
I33808 300-500 CE H3k J2a1a1b2a1b1b2c~ Hvar - Radošević
I33888 300-500 CE H9a J2a1a4b Hvar - Radošević
I33886 300-500 CE HV E1b1a1a1a1c1b2a2 Hvar - Radošević
I33809 300-500 CE HV12b1 J2a1a1a2b1b Hvar - Radošević
I33893 300-500 CE H5a3a2 Hvar - Radošević
I33890 300-500 CE R0a G2a2b2a1a1b2 Hvar - Radošević
I33891 300-500 CE K1c1 Hvar - Radošević

https://www.biorxiv.org/content/10.1101/...y-material

The newly produced genomic data will be deposited in the European Nucleotide Archive (ENA) with the
following accession number: X (added after the revision process).
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https://www.ebi.ac.uk/ena/browser/view/PRJNA1082095
Target: CapsianWGS_scaled
Distance: 1.2510% / 0.01251049
37.2 Iberomaurusian
36.8 Early_European_Farmer
12.8 Early_Levantine_Farmer
8.0 Steppe_Pastoralist
4.8 SSA
0.4 Iran_Neolithic
FTDNA : 91% North Africa +<2% Bedouin + <2  Southern-Levantinfo + <1 Sephardic Jewish + 3% Malta +  3%  Iberian Peninsula
23andME :  100% North Africa

WGS ( Y-DNA and mtDNA)
Y-DNA: E-A30032< A30480 ~1610 CE
mtDNA: V25b 800CE ? ( age mtDNA not accurate )
Reply
ilabv,

Could you post the download link to the genotype data of Czulice samples (one Asian Hun and one European)?
ilabv likes this post
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Please do this one:-

https://www.ebi.ac.uk/ena/browser/view/PRJEB34154
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(05-21-2024, 09:22 PM)Capsian20 Wrote: https://www.ebi.ac.uk/ena/browser/view/PRJNA1082095

Data hasn't been released yet.
Capsian20 likes this post
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(05-22-2024, 05:13 AM)Gabru77 Wrote: Please do this one:-

https://www.ebi.ac.uk/ena/browser/view/PRJEB34154

It's been done, Davidski often doesn't convert samples below 0.12x coverage. This sample was way below that threshold
Reply
(05-21-2024, 09:22 PM)Capsian20 Wrote: https://www.ebi.ac.uk/ena/browser/view/PRJNA1082095

Data is not available yet
Capsian20 likes this post
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Ancient genomes revealed the complex human interactions of the ancient western Tibetans

The western Tibetan Plateau is the crossroad among the Tibetan Plateau, Central Asia, and South Asia and it is a potential human migration pathway connecting these regions. However, the population history of the western Tibetan Plateau remains largely unexplored due to the lack of ancient genomes covering a long-time interval from this area. Here, we reported genome-wide data of 65 individuals dated to 3,500-300 years before present (BP) in the Ngari prefecture.

https://ngdc.cncb.ac.cn/bioproject/browse/PRJCA019728

------------------------------------------------------------------------------------------------

Sending to Davidski for conversion soon
Gabru77, Capsian20, Megalophias like this post
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@ilabv
Ok, is it possible to convert the India_Harappan I6113 sample present in latest 1240K v54? It's 2.6% coverage, 32K SNPs. I can try extracting it in Plink format

https://send.zcyph.cc/download/be3e11b1f...yWUoU3ZxPQ
Capsian20 likes this post
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Ancient genomes revealed the complex human interactions of the ancient western Tibetans: https://www.cell.com/current-biology/ful...24)00581-5

Quote:Scaled

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Raw

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tibet:HRR1385332,0.0019,-0.0374,-0.0033,-0.0047,0.0032,0.0036,0.0022,0.0012,0.0076,0.0073,-0.0448,-0.007,0.005,-0.0022,-0.0096,-0.0026,0.0076,-0.0028,-0.0052,0.0083,0.0102,0.0232,0.0097,0.0017,0.0226
tibet:HRR1385334,0.0026,-0.0377,-0.0051,-0.0087,0.0032,0.0025,0.0002,0.0034,0.007,0.0094,-0.0408,-0.0004,0.0072,-0.0083,-0.006,0.0086,0.0095,-0.0106,-0.0028,0.0008,0.0059,0.0287,0.0136,0.006,0.0202
tibet:HRR1385335,0.0022,-0.0373,-0.002,-0.0051,0.0037,0.0042,0.0007,0.0016,0.0066,0.0063,-0.0446,-0.0045,0.01,-0.0072,-0.0106,0,0.0016,-0.0043,-0.0046,0.0089,0.0071,0.0216,0.0028,0.0001,0.0297
tibet:HRR1385336,0.0014,-0.0385,-0.004,-0.0064,0.0032,0.0019,0.0021,0.0036,0.0066,0.0135,-0.0491,-0.01,0.0084,-0.0036,-0.0102,0.001,0.0104,0.0012,-0.0035,0.0027,0.0042,0.0225,0.007,-0.0005,0.025
tibet:HRR1385337,0.0018,-0.038,-0.0025,-0.0066,0.0019,0.0035,0.0042,0.0043,0.0043,0.008,-0.0478,-0.0034,0.0073,0.002,-0.0066,-0.0058,0.0061,-0.0002,-0.0048,-0.001,0.0018,0.0148,0.0027,0.0034,0.0249
tibet:HRR1385338,0.0027,-0.0159,-0.0351,0.0282,-0.0166,0.0201,-0.0005,0.0036,0.0195,0.0149,-0.011,-0.0041,0.0022,0.0036,-0.0053,-0.013,-0.0089,0.0028,-0.0032,0.004,0.0013,0.0119,0.001,-0.0043,0.0025
tibet:HRR1385339,0.002,-0.0377,-0.0033,-0.0039,0.0019,0.0032,0.0045,0.0031,0.0025,0.0094,-0.0446,-0.0063,-0.0006,0.0002,-0.0042,-0.0087,-0.0113,0.0025,-0.0026,0.0002,-0.0021,0.0222,0.0068,-0.0032,0.0331
tibet:HRR1385342,0.0017,-0.0373,-0.0044,-0.0043,0.0045,0.0025,0.0015,0.0034,0.0058,0.0027,-0.0436,0.0032,0.0062,-0.0056,-0.0087,-0.0046,0.0067,-0.0013,-0.0038,0.0024,-0.0025,0.0214,0.0127,0.0022,0.0284
tibet:HRR1385343,0.0029,-0.0325,-0.0051,0.0004,-0.0051,0.0049,0.0002,0.0011,0.0015,0.0055,-0.038,-0.0003,0.0045,-0.0027,-0.0034,-0.006,-0.0021,-0.0002,0.003,-0.0018,-0.0029,0.0181,0.0051,0.0005,0.0186
tibet:HRR1385344,0.0027,-0.0362,-0.0021,-0.0034,0.0012,0.0035,0.0021,0.0031,0.0018,0.0073,-0.0462,-0.0081,0.0052,0.0028,-0.0057,-0.0023,-0.0005,-0.0088,-0.0066,0.0065,-0.0032,0.0135,0.0037,-0.0021,0.0294
tibet:HRR1385346,0.0019,-0.0386,-0.004,-0.0067,0.0044,0.0028,0.0041,0.0039,0.0085,0.0081,-0.0482,-0.0035,0.0047,-0.0055,-0.0104,-0.0078,-0.006,-0.0032,-0.0019,0.0008,0.0064,0.0263,0.0074,-0.0083,0.0307
tibet:HRR1385347,0.0015,-0.039,-0.0028,-0.0077,0.005,0.0035,0.0037,0.0036,0.0052,0.0108,-0.048,-0.0063,0.0063,-0.0043,-0.0078,-0.0054,0.0021,0.0005,-0.0013,0.0089,0.008,0.0215,0.0055,0.0048,0.0301
tibet:HRR1385348,0.0013,-0.04,-0.0013,-0.0083,0.0048,0.0019,0.0034,0.0042,0.0079,0.013,-0.0442,-0.0041,0.0002,-0.0095,-0.0077,0,0.0028,0.0016,-0.0047,0.0081,-0.003,0.0256,0.002,0.0055,0.0268
tibet:HRR1385349,0.0012,-0.0396,-0.004,-0.0079,0.0031,0.0029,0.0021,0.003,0.0064,0.0118,-0.0503,-0.0053,0.0068,-0.0036,-0.01,-0.0041,0.0075,-0.0015,-0.0052,0.0043,0.0037,0.0269,0.0102,-0.0046,0.0246
tibet:HRR1385350,0.0018,-0.0381,-0.0016,-0.0053,0.0017,0.0019,-0.0015,0.0029,0.0069,0.0104,-0.0492,-0.0125,0.01,-0.0056,0.0059,-0.007,-0.0082,0.0025,-0.0058,-0.0011,0.0101,0.0125,0.0083,-0.0041,0.0232
Michalis Moriakos, ChrisR, Jalisciense And 4 others like this post
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(05-23-2024, 12:03 PM)ilabv Wrote: Ancient genomes revealed the complex human interactions of the ancient western Tibetans: https://www.cell.com/current-biology/ful...24)00581-5

Quote:Scaled

tibet:HRR1385286,...
tibet:HRR1385287,
I'm looking for the results from a certain age (2.2k ypb) so like in Table S1 the IDs are:
GBSL11 Gebusailu
GBSL6 Gebusailu
SDLG16 Sangdalongguo
I could not find the link to the online data rep. where the IDs HRR1385... are crosslinked to the Specimen ID?
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@ChrisR
Is SDLG16 the Indian admixed outlier?
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(05-23-2024, 03:32 PM)Gabru77 Wrote: @ChrisR
Is SDLG16 the Indian admixed outlier?

SDLG7 is the Indian outlier. I guess that is tibet:HRR1385338 in this set, as that is the most Indian-shifted. 
If so then they may be in the same order as in the supplemental spreadsheet, since SDLG7 is the 53rd entry, and the dataset starts with HRR1385286.

PS also seems to match with missing entries being the duplicate samples.
PPS or not
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@Megalophias
Yes as soon coordinates were posted here I compared the distances of all with ancient individuals and found that HRR1385338 was the outlier. Here's how he scores:-

Target: CHN_Tibet_Sangdalongguo_1900BP_o:HRR1385338
Distance: 2.5922% / 0.02592150
52.6 IRN_Shahr_I_Sokhta_BA_2_I8728_enhanced
23.8 Tibet
16.6 SAHG
7.0 KAZ_Oy_Dzhaylau_MLBA
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